🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Junyue Cao

Rockefeller University

ORCID: 0000-0003-4097-489X
Biochemistry, Genetics and Molecular BiologyNeuroscience

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile
27.0Author DataRank

Indexed papers

6in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology
Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 6 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Top data-sharing exemplar

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Comprehensive single-cell transcriptional profiling of a multicellular organism

Science(2017)10.1126/science.aam8940
Top 2%
8.4DataRank
Top 2%1581 citations

Jonathan S. Packer, Vijay Ramani, Darren A. Cusanovich, Chau Huynh, Xiaojie Qiu +9 more

Papers

Driven by 28 papers — median percentile 95. Top paper: “Comprehensive single-cell transcriptional profiling of a multicellular organism”.

Comprehensive single-cell transcriptional profiling of a multicellular organism

Science(2017)10.1126/science.aam8940
Top 2%
8.4DataRank
Top 2%1581 citations

Jonathan S. Packer, Vijay Ramani, Darren A. Cusanovich, Chau Huynh, Xiaojie Qiu +9 more

A human cell atlas of fetal gene expression

Science(2020)10.1126/science.aba7721
Top 3%
6.2DataRank
Top 3%842 citations

Diana R. O’Day, Hannah A. Pliner, Paul D. Kingsley, Mei Deng, Riza M. Daza +12 more

A human cell atlas of fetal chromatin accessibility

Science(2020)10.1126/science.aba7612
Top 3%
5.8DataRank
Top 3%466 citations

Andrew J. Hill, Riza M. Daza, Junyue Cao, Diana R. O’Day, Hannah A. Pliner +12 more

Systematic reconstruction of cellular trajectories across mouse embryogenesis

Nature Genetics(2022)10.1038/s41588-022-01018-x
Top 6%
3.8DataRank
Top 6%212 citations

Junyue Cao, Beth Martin, Tony Li, Ian Welsh, Sanjay Srivatsan +10 more

A single-cell time-lapse of mouse prenatal development from gastrula to birth

Nature(2024)10.1038/s41586-024-07069-w
N/A
3.2DataRank · unranked
181 citations

Beth Martin, Ian Welsh, Riza M. Daza, Truc-Mai Le, Xingfan Huang +20 more

A global view of aging and Alzheimer’s pathogenesis-associated cell population dynamics and molecular signatures in human and mouse brains

Nature Genetics(2023)10.1038/s41588-023-01572-y
Top 14%
1.5DataRank
Top 14%84 citations

Ziyu Lu, Jasper Lee, Gábor Bányai, Sonya Anderson, Abdulraouf Abdulraouf +12 more

A panoramic view of cell population dynamics in mammalian aging

Science(2024)10.1126/science.adn3949
Top 18%
1.2DataRank
Top 18%85 citations

Chloe Schaefer, Weirong Jiang, Ziyu Lu, Jasper Lee, Andras Sziraki +9 more

Systematic reconstruction of the cellular trajectories of mammalian embryogenesis

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.06.08.447626
N/A
0.871DataRank · unranked
5 citations

Junyue Cao, Tony Li, Sanjay Srivatsan, Xingfan Huang, Diego Calderon +7 more

Single-cell, whole-embryo phenotyping of mammalian developmental disorders

Nature(2023)10.1038/s41586-023-06548-w
N/A
0.546DataRank · unranked
37 citations

Jana Henck, Chengxiang Qiu, Varun K. A. Sreenivasan, Saranya Balachandran, Oana V. Amarie +36 more

A single-cell transcriptional timelapse of mouse embryonic development, from gastrula to pup

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.04.05.535726
N/A
0.470DataRank · unranked
22 citations

Beth Martin, Ian Welsh, Riza M. Daza, Truc-Mai Le, Xingfan Huang +20 more

Optics-free Spatial Genomics for Mapping Mouse Brain Aging

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.08.06.606712
N/A
0.360DataRank · unranked
10 citations

Weirong Jiang, Zihan Xu, Zehao Zhang, Samuel Isakov, Tanvir Raihan +3 more

Single cell, whole embryo phenotyping of pleiotropic disorders of mammalian development

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.08.03.500325
N/A
0.269DataRank · unranked
5 citations

Jana Henck, Chengxiang Qiu, Varun K. A. Sreenivasan, Saranya Balachandran, Rose Yinghan Behncke +28 more

Reversible, tunable epigenetic silencing of TCF1 generates flexibility in the T cell memory decision

Immunity(2024)10.1016/j.immuni.2023.12.006
N/A
0DataRank · unranked
52 citations

Elisa C. Clark, Rajesh M. Valanparambil, Obinna Ukogu, Wei Yang, Riza M. Daza +12 more

Spatiotemporal profiling reveals the impact of caloric restriction in the aging mammalian brain

Cell Reports(2025)10.1016/j.celrep.2025.116165
N/A
0DataRank · unranked
1 citations

Alexander E. Epstein, Chloe Schaefer, Abdulraouf Abdulraouf, Weirong Jiang, Wei Zhou +2 more

Transcript-guided targeted cell enrichment for scalable single-nucleus RNA sequencing

Cell Genomics(2025)10.1016/j.xgen.2025.101101
N/A
0DataRank · unranked
1 citations

Zehao Zhang, Andras Sziraki, Abdulraouf Abdulraouf, Abid Rehman, Zihan Xu +8 more

Uncovering Convergent Cell State Dynamics Across Divergent Genetic Perturbations Through Single-Cell High-Content CRISPR Screening

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.05.02.651939
N/A
0DataRank · unranked
1 citations

Ziyu Lu, Aileen Ugurbil, Abdulraouf Abdulraouf, Andrew Liao, Jianxiang Zhang +3 more

EnrichSci: Transcript-guided Targeted Cell Enrichment for Scalable Single-Cell RNA Sequencing

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.05.02.651937
N/A
0DataRank · unranked
1 citations

Zehao Zhang, Andras Sziraki, Abdulraouf Abdulraouf, Zihan Xu, Ziyu Lu +3 more

Sci-fate characterizes the dynamics of gene expression in single cells

Nature Biotechnology(2020)10.1038/s41587-020-0480-9
N/A
0DataRank · unranked
183 citations

Wei Zhou, Frank J. Steemers, Cole Trapnell, Jay Shendure, Junyue Cao

Expanding the binding specificity for RNA recognition by a PUF domain

Nature Communications(2021)10.1038/s41467-021-25433-6
N/A
0DataRank · unranked
17 citations

Daniel R. Melamed, Gábor Bányai, Cindy Meyer, Thomas Tuschl, Marvin Wickens +3 more

Secukinumab improves mild-to-moderate psoriasis: A randomized, placebo-controlled exploratory clinical trial

Journal of the American Academy of Dermatology(2022)10.1016/j.jaad.2022.04.060
N/A
0DataRank · unranked
9 citations

Jongmi Lee, Jason E. Hawkes, Xuan Li, Norma Kunjravia, Darshna Rambhia +8 more

Tethering distinct molecular profiles of single cells by their lineage histories to investigate sources of cell state heterogeneity

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.05.12.491602
N/A
0DataRank · unranked
7 citations

Junyue Cao, Jay Shendure, Anna Minkina

Flexible and scalable control of T cell memory by a reversible epigenetic switch

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.12.31.521782
N/A
0DataRank · unranked
4 citations

Elisa C. Clark, Obinna Ukogu, Wei Yang, Riza M. Daza, Kenneth K.H. Ng +8 more

Oncogenic role of a developmentally regulated NTRK2 splice variant

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.01.07.475392
N/A
0DataRank · unranked
0 citations

Sonali Arora, Nicholas Nuechterlein, Michael Zager, Keith R. Loeb, Patrick J. Cimino +13 more

Single-cell transcriptomics suggest distinct upstream drivers of IL-17A/F in hidradenitis versus psoriasis

Journal of Allergy and Clinical Immunology(2023)10.1016/j.jaci.2023.05.012
N/A
0DataRank · unranked
82 citations

Jongmi Lee, Xuan Li, Hyun Soo Lee, Katherine Kim, Vasuma Chaparala +6 more

Dissecting key regulators of transcriptome kinetics through scalable single-cell RNA profiling of pooled CRISPR screens

Nature Biotechnology(2023)10.1038/s41587-023-01948-9
N/A
0DataRank · unranked
51 citations

Andras Sziraki, Jasper Lee, Wei Zhou, Junyue Cao, Zihan Xu

Tracking cell-type-specific temporal dynamics in human and mouse brains

Cell(2023)10.1016/j.cell.2023.08.042
N/A
0DataRank · unranked
51 citations

Melissa Zhang, Jasper Lee, Andras Sziraki, Sonya Anderson, Zehao Zhang +7 more

A high‐throughput single‐cell RNA expression profiling method identifies human pericyte markers

Neuropathology and Applied Neurobiology(2023)10.1111/nan.12942
N/A
0DataRank · unranked
18 citations

Yu Zhong, Allison M. Neltner, Dana M. Niedowicz, Colin B Rogers, Donna M. Wilcock +7 more

PerturbSci-Kinetics : Dissecting key regulators of transcriptome kinetics through scalable single-cell RNA profiling of pooled CRISPR screens

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.01.29.526143
N/A
0DataRank · unranked
7 citations

Andras Sziraki, Jasper Lee, Wei Zhou, Junyue Cao, Zihan Xu