John F. Marko

Biochemistry, Genetics and Molecular BiologyPhysics and AstronomyEnvironmental ScienceEngineering

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 24 papers. Top paper: “Chromosome organization by one-sided and two-sided loop extrusion”.

Chromosome organization by one-sided and two-sided loop extrusion

eLife(2020)10.7554/elife.53558

N/A

3.4DataRank · unranked

164 citations

Aafke A. van den Berg, Hugo B. Brandão, John F. Marko, Leonid A. Mirny, Edward J. Banigan

High-resolution, genome-wide mapping of positive supercoiling in chromosomes

eLife(2021)10.7554/elife.67236

N/A

2.5DataRank · unranked

88 citations

Ryo Kawamura, Megan L. Littlehale, John F. Marko, Michael T. Laub, Monica S. Guo

Coarse-grained modelling of DNA plectoneme pinning in the presence of base-pair mismatches

Nucleic Acids Research(2020)10.1093/nar/gkaa836

N/A

0DataRank · unranked

24 citations

Sumitabha Brahmachari, John F. Marko, Siddhartha Das, Keir C. Neuman, Parth Rakesh Desai

HP1α is a chromatin crosslinker that controls nuclear and mitotic chromosome mechanics

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.10.09.331900

N/A

0DataRank · unranked

9 citations

Ronald Biggs, Edward J. Banigan, Xiaotao Wang, Katherine Chiu, Cameron Herman +11 more

Measurement of the torque in braided DNAs using a thermodynamic Maxwell relation

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.02.07.938209

N/A

0DataRank · unranked

1 citations

Sumitabha Brahmachari, Yang Liu, Ke Ding, John F. Marko, Botao Xiao

Single-Molecule Micromanipulation Studies of Methylated DNA

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.07.29.227199

N/A

0DataRank · unranked

1 citations

John F. Marko, Tetiana Zaichuk

Micromanipulation of prophase I chromosomes from mouse spermatocytes reveals high stiffness and gel-like chromatin organization

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.08.31.276402

N/A

0DataRank · unranked

0 citations

Ning Liu, Yiheng Peng, John F. Marko, Huanyu Qiao, Ronald Biggs

Liquid chromatin Hi-C characterizes compartment-dependent chromatin interaction dynamics

Nature Genetics(2021)10.1038/s41588-021-00784-4

N/A

0DataRank · unranked

152 citations

Tyler Borrman, Andrew D. Stephens, Denis L. J. Lafontaine, Sergey V. Venev, Zhiping Weng +3 more

HP1α is a chromatin crosslinker that controls nuclear and mitotic chromosome mechanics

eLife(2021)10.7554/elife.63972

N/A

0DataRank · unranked

152 citations

Ronald Biggs, Edward J. Banigan, Xiaotao Wang, Katherine Chiu, Cameron Herman +11 more

Single-molecule micromanipulation studies of methylated DNA

Biophysical Journal(2021)10.1016/j.bpj.2021.03.039

N/A

0DataRank · unranked

21 citations

John F. Marko, Tetiana Zaichuk

DNA tension-modulated translocation and loop extrusion by SMC complexes revealed by molecular dynamics simulations

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.03.15.435506

N/A

0DataRank · unranked

5 citations

Enrico Carlon, Stephan Gruber, John F. Marko, Stefanos K. Nomidis

High-resolution, genome-wide mapping of positive supercoiling in chromosomes

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.02.25.432897

N/A

0DataRank · unranked

4 citations

Ryo Kawamura, Megan L. Littlehale, John F. Marko, Michael T. Laub, Monica S. Guo

DNA tension-modulated translocation and loop extrusion by SMC complexes revealed by molecular dynamics simulations

Nucleic Acids Research(2022)10.1093/nar/gkac268

N/A

0DataRank · unranked

57 citations

Enrico Carlon, Stephan Gruber, John F. Marko, Stefanos K. Nomidis

A Versatile Micromanipulation Apparatus for Biophysical Assays of the Cell Nucleus

Cellular and Molecular Bioengineering(2022)10.1007/s12195-022-00734-y

N/A

0DataRank · unranked

24 citations

Viswajit Kandula, Ronald Biggs, John F. Marko, Andrew D. Stephens, Marilena L. Currey

RNA interacts with topoisomerase I to adjust DNA topology

Molecular Cell(2024)10.1016/j.molcel.2024.07.032

N/A

0DataRank · unranked

19 citations

Kouki Abe, Paola Orozco, Homa Rahnamoun, Pedro Antonio Ávila-López, Elijah Taylor +10 more

Heterogeneous flexibility can contribute to chromatin segregation in the cell nucleus

Physical review. E(2024)10.1103/physreve.110.014403

N/A

0DataRank · unranked

15 citations

Mónica Olvera de la Cruz, John F. Marko, Aykut Erbaş, Martin Girard

Cell cycle and age-related modulations of mouse chromosome stiffness

eLife(2024)10.7554/elife.97403

N/A

0DataRank · unranked

1 citations

Wenan Qiang, Philip W. Jordan, John F. Marko, Huanyu Qiao, Ning Liu

Isolation and manipulation of meiotic spindles from mouse oocytes reveals migration regulated by pulling force during asymmetric division

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.12.06.627260

N/A

0DataRank · unranked

1 citations

Ryo Kawamura, Wenan Qiang, Daniela Londono, Ahmed Z. Balboula, John F. Marko +2 more

Cell cycle and Age-Related Modulations of Mouse Chromosome Stiffness

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.03.06.583771

N/A

0DataRank · unranked

0 citations

Wenan Qiang, Philip W. Jordan, John F. Marko, Huanyu Qiao, Ning Liu

Reviewer #2 (Public Review): Cell-cycle and Age-Related Modulations in Mouse Chromosome Stiffness

(2024)10.7554/elife.97403.1.sa1

N/A

0DataRank · unranked

0 citations

Wenan Qiang, Philip W. Jordan, John F. Marko, Huanyu Qiao, Ning Liu

Molecular Crowding Suppresses Mechanical Stress-Driven DNA Strand Separation

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.12.11.628023

N/A

0DataRank · unranked

0 citations

John F. Marko, Parth Rakesh Desai

Molecular crowding suppresses mechanical stress-driven DNA strand separation

Biophysical Journal(2025)10.1016/j.bpj.2025.04.024

N/A

0DataRank · unranked

5 citations

John F. Marko, Parth Rakesh Desai

Cell cycle and age-related modulations of mouse chromosome stiffness

eLife(2025)10.7554/elife.97403.3

N/A

0DataRank · unranked

1 citations

Wenan Qiang, Philip W. Jordan, John F. Marko, Huanyu Qiao, Ning Liu

Micromanipulation of prophase I chromosomes from mouse spermatocytes reveals high stiffness and gel-like chromatin organization

Communications Biology(2020)10.1038/s42003-020-01265-w

N/A

0DataRank · unranked

16 citations

Ning Liu, Yiheng Peng, John F. Marko, Huanyu Qiao, Ronald Biggs