Shixin Liu

Biochemistry, Genetics and Molecular BiologyEnvironmental Science

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 32 papers. Top paper: “Incomplete transcripts dominate the Mycobacterium tuberculosis transcriptome”.

Incomplete transcripts dominate the Mycobacterium tuberculosis transcriptome

Nature(2024)10.1038/s41586-024-07105-9

N/A

0.505DataRank · unranked

28 citations

Shuqi Li, Ruby Froom, Ling Wang, Mirjana Lilić, Madeleine Delbeau +4 more

Force-dependent stimulation of RNA unwinding by SARS-CoV-2 nsp13 helicase

Biophysical Journal(2020)10.1016/j.bpj.2020.11.2276

N/A

0DataRank · unranked

67 citations

Patrick M. M. Shelton, Michael Grasso, Xiaocong Cao, Sara Warrington, Amol Aher +3 more

Single-molecule and in silico dissection of the interaction between Polycomb repressive complex 2 and chromatin

Proceedings of the National Academy of Sciences(2020)10.1073/pnas.2003395117

N/A

0DataRank · unranked

65 citations

Eva J. Ge, Xingcheng Lin, Matthew J. Reynolds, Wen Jun Xie, Thomas Walz +4 more

Force-dependent stimulation of RNA unwinding by SARS-CoV-2 nsp13 helicase

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.07.31.231274

N/A

0DataRank · unranked

9 citations

Patrick M. M. Shelton, Michael Grasso, Xiaocong Cao, Sara Warrington, Amol Aher +3 more

Molecular mechanism for direct actin force-sensing by α-catenin

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.02.18.954735

N/A

0DataRank · unranked

5 citations

Santiago Espinosa de los Reyes, Matthew J. Reynolds, Shixin Liu, Gregory M. Alushin, Lin Mei

Two Distinct Binding Modes of a Protein Cofactor with its Target RNA

UNC Libraries(2020)10.17615/8tw1-e460

N/A

0DataRank · unranked

0 citations

Shixin Liu, Kevin M. Weeks, Xiaowei Zhuang, Lucas G. Nivón, Geqing Chai +2 more

Optical tweezers in single-molecule biophysics

Nature Reviews Methods Primers(2021)10.1038/s43586-021-00021-6

N/A

0DataRank · unranked

608 citations

Yann R. Chemla, Shixin Liu, Michelle D. Wang, Carlos Bustamante

Cooperative DNA looping by PRC2 complexes

Nucleic Acids Research(2021)10.1093/nar/gkab441

N/A

0DataRank · unranked

43 citations

Rachel Leicher, Shixin Liu, Bin Zhang, Xingcheng Lin

Encephalopathy at admission predicts adverse outcomes in patients with SARS‐CoV‐2 infection

CNS Neuroscience & Therapeutics(2021)10.1111/cns.13687

N/A

0DataRank · unranked

5 citations

Shixin Liu, Yanhe Xiao, Thi My Linh Tran, Ji Whae Choi, Jing Wu +17 more

Single-stranded nucleic acid sensing and coacervation by linker histone H1

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.03.17.435841

N/A

0DataRank · unranked

6 citations

Adewola Osunsade, Andrew P. Latham, Gabriella N. L. Chua, John W. Watters, Sophia Christodoulou-Rubalcava +4 more

Nucleosome-directed replication origin licensing independent of a consensus DNA sequence

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.08.17.456647

N/A

0DataRank · unranked

4 citations

Michael Wasserman, Olga Yurieva, Lu Bai, Michael E. O’Donnell, Shixin Liu +1 more

The MIDAS domain of AAA mechanoenzyme Mdn1 forms catch bonds with two different substrates

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.08.30.458255

N/A

0DataRank · unranked

0 citations

Paul Dominic B. Olinares, Brian T. Chait, Shixin Liu, Tarun M. Kapoor, Keith J. Mickolajczyk

Chromatin sequesters pioneer transcription factor Sox2 from exerting force on DNA

Nature Communications(2022)10.1038/s41467-022-31738-x

N/A

0DataRank · unranked

50 citations

Sai Li, Jeremy Chang, John W. Watters, Htet Ng, Adewola Osunsade +3 more

Nucleosome-directed replication origin licensing independent of a consensus DNA sequence

Nature Communications(2022)10.1038/s41467-022-32657-7

N/A

0DataRank · unranked

27 citations

Michael Wasserman, Olga Yurieva, Lu Bai, Michael E. O’Donnell, Shixin Liu +1 more

Smc5/6’s multifaceted DNA binding capacities stabilize branched DNA structures

Nature Communications(2022)10.1038/s41467-022-34928-9

N/A

0DataRank · unranked

26 citations

Shibai Li, Emily C. Beckwitt, Thane Than, Cory Haluska, Joshua Chandanani +4 more

The MIDAS domain of AAA mechanoenzyme Mdn1 forms catch bonds with two different substrates

eLife(2022)10.7554/elife.73534

N/A

0DataRank · unranked

14 citations

Paul Dominic B Olinares, Brian T Chait, Shixin Liu, Tarun M. Kapoor, Keith J. Mickolajczyk

Probing the Interaction Between Chromatin and Chromatin-Associated Complexes with Optical Tweezers

Methods in molecular biology(2022)10.1007/978-1-0716-2229-2_11

N/A

0DataRank · unranked

4 citations

Shixin Liu, Rachel Leicher

Chromatin sequesters pioneer transcription factor Sox2 from exerting force on DNA

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.02.02.478883

N/A

0DataRank · unranked

1 citations

Sai Li, Jeremy Chang, John W. Watters, Htet Ng, Adewola Osunsade +3 more

Head-on and co-directional RNA polymerase collisions orchestrate bidirectional transcription termination

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.10.23.513370

N/A

0DataRank · unranked

1 citations

John W. Watters, Xiangwu Ju, Shixin Liu, Ling Wang

Head-on and co-directional RNA polymerase collisions orchestrate bidirectional transcription termination

Molecular Cell(2023)10.1016/j.molcel.2023.02.017

N/A

0DataRank · unranked

38 citations

John W. Watters, Xiangwu Ju, Genzhe Lu, Shixin Liu, Ling Wang

Catalytic and non-catalytic mechanisms of histone H4 lysine 20 methyltransferase SUV420H1

Molecular Cell(2023)10.1016/j.molcel.2023.07.020

N/A

0DataRank · unranked

18 citations

Kristjan H. Gretarsson, Rochelle M. Shih, Laura J Hsieh, Tracy Lou, Pablo De Ioannes +11 more

Structure and DNA-bridging activity of the essential Rec114–Mei4 trimer interface

Genes & Development(2023)10.1101/gad.350461.123

N/A

0DataRank · unranked

16 citations

Emily M. Grasso, Stephen Pu, Mengyang Zou, Shixin Liu, David Eliezer +2 more

Structure and DNA bridging activity of the essential Rec114–Mei4 trimer interface

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.01.18.524603

N/A

0DataRank · unranked

4 citations

Emily M. Grasso, Stephen Pu, Shixin Liu, David Eliezer, Scott Keeney +1 more

Differential dynamics specify MeCP2 function at methylated DNA and nucleosomes

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.06.02.543478

N/A

0DataRank · unranked

3 citations

John W. Watters, Paul Dominic B. Olinares, Joshua A. Luo, Brian T. Chait, Shixin Liu +1 more

Differential dynamics specify MeCP2 function at nucleosomes and methylated DNA

Nature Structural & Molecular Biology(2024)10.1038/s41594-024-01373-9

N/A

0DataRank · unranked

13 citations

John W. Watters, Paul Dominic B. Olinares, Masuda Begum, Lauren E. Vostal, Joshua A. Luo +3 more

Neuronal rhythmicity and cortical arousal in a mouse model of absence epilepsy

Experimental Neurology(2024)10.1016/j.expneurol.2024.114925

N/A

0DataRank · unranked

7 citations

Samiksha Chopra, Xinyuan Zheng, Shixin Liu, Patrick Paszkowski, Marcus Valcarce‐Aspegren +5 more

H4K16 acylations destabilize chromatin architecture and facilitate transcriptional response during metabolic perturbations

Molecular Cell(2025)10.1016/j.molcel.2025.11.030

N/A

0DataRank · unranked

5 citations

A. E. Coraor, Tamás Schauer, Yiheng Wu, Jianfeng Sun, Natalie Möritz +15 more

Decreased locus coeruleus multiunit activity in a mouse model of temporal lobe seizures with impaired consciousness

Experimental Neurology(2025)10.1016/j.expneurol.2025.115233

N/A

0DataRank · unranked

5 citations

Patrick Paszkowski, Shixin Liu, Qian Wu, Sarah C. McGill, Lim‐Anna Sieu +2 more

A non-catalytic role for RFC in PCNA-mediated processive DNA synthesis

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.08.08.669392

N/A

0DataRank · unranked

1 citations

Emily C. Beckwitt, Victoria Miller-Browne, Olga Yurieva, Dan Zhang, Bryce J. Katch +7 more

Lateral septal inhibition of nucleus basalis through direct and indirect pathways in focal limbic seizures

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.09.17.676820

N/A

0DataRank · unranked

0 citations

Lim‐Anna Sieu, Isabel Shi, Vivian Doan, Shixin Liu, Chengsan Sun +5 more

Molecular mechanism for direct actin force-sensing by α-catenin

eLife(2020)10.7554/elife.62514

N/A

0DataRank · unranked

104 citations

Santiago Espinosa de los Reyes, Matthew J. Reynolds, Rachel Leicher, Shixin Liu, Gregory M. Alushin +1 more

Dpb11 facilitates the colocalization of Mec1-Ddc2 with its activators on gapped DNA

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.11.28.691181

N/A

0DataRank · unranked

0 citations

Gabriella N. L. Chua, Shixin Liu, Michael E. O’Donnell, Emily C. Beckwitt