David K. Johnson

Also affiliated with Institute of Computational Modeling, University of California, Davis

MedicineComputer Science

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

1in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 1 indexed paper attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Papers

Driven by 35 papers. Top paper: “Druggable Protein Interaction Sites Are More Predisposed to Surface Pocket Formation than the Rest of the Protein Surface”.

Druggable Protein Interaction Sites Are More Predisposed to Surface Pocket Formation than the Rest of the Protein Surface

PLoS Computational Biology(2013)10.1371/journal.pcbi.1002951

N/A

0.695DataRank · unranked

102 citations

John Karanicolas, David K. Johnson

Molecular insights into the structure and function of the Staphylococcus aureus fatty acid kinase

Journal of Biological Chemistry(2024)10.1016/j.jbc.2024.107920

N/A

0.390DataRank · unranked

8 citations

Zhen Xu, Benjamin Ryan, Zachary DeMars, Miranda J. Ridder, David K. Johnson +9 more

Mutation of a highly conserved isoleucine residue in loop 2 of several β-coronavirus macrodomains indicates that enhanced ADP-ribose binding is detrimental for replication

Journal of Virology(2024)10.1128/jvi.01313-24

N/A

0.384DataRank · unranked

8 citations

Jessica J. Pfannenstiel, Yousef M. Alhammad, Joseph J. O’Connor, Roshan Ghimire, Rakshya Shrestha +11 more

Rationally designed inhibitors of the Musashi protein-RNA interaction by hotspot mimicry

Research Square(2023)10.21203/rs.3.rs-2395172/v1

N/A

0.292DataRank · unranked

6 citations

Yusuf Adeshina, Igor Bychkov, Yan Xia, Ragul Gowthaman, Sven A. Miller +10 more

Preformulation Characterization and the Effect of Ionic Excipients on the Stability of a Novel DB Fusion Protein

Journal of Pharmaceutical Sciences(2020)10.1016/j.xphs.2020.09.008

N/A

0.269DataRank · unranked

5 citations

Gang Hu, Siva Sai Kumar Ratnakaram, David K. Johnson, William D. Picking, Wendy L. Picking +2 more

Potent Protease Inhibitors of Highly Pathogenic Lagoviruses: Rabbit Hemorrhagic Disease Virus and European Brown Hare Syndrome Virus

Microbiology Spectrum(2022)10.1128/spectrum.00142-22

N/A

0.242DataRank · unranked

3 citations

David K. Johnson, Scott Lovell, William C. Groutas, Kyeong‐Ok Chang, Yunjeong Kim +1 more

The Crystal Structure of Human Transport and Golgi Organization 2 Homolog ( TANGO2 ) Protein Reveals an αββα‐Fold Arrangement

Proteins Structure Function and Bioinformatics(2025)10.1002/prot.70023

N/A

0.165DataRank · unranked

2 citations

Alyssa Powers, K.P. Battaile, Al‐Walid Mohsen, David K. Johnson, Scott Lovell +2 more

Simple and Rapid High-Throughput Assay to Identify HSV-1 ICP0 Transactivation Inhibitors

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.01.13.426532

N/A

0DataRank · unranked

1 citations

Chunmiao Yu, Peter R. McDonald, Anuradha Roy, David K. Johnson, David J. Davido +1 more

An MHV macrodomain mutant predicted to lack ADP-ribose binding activity is severely attenuated, indicating multiple roles for the macrodomain in coronavirus replication

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.03.30.437796

N/A

0DataRank · unranked

1 citations

Joseph J. O’Connor, Catherine M. Kerr, Ethan Doerger, Nancy Schwarting, Parker Sperstad +3 more

Discovery of compounds that inhibit SARS-CoV-2 Mac1-ADP-ribose binding by high-throughput screening

Antiviral Research(2022)10.1016/j.antiviral.2022.105344

N/A

0DataRank · unranked

37 citations

Yousef M. Alhammad, Peter R. McDonald, David K. Johnson, Junlin Zhuo, Sarah Wazir +5 more

Design, synthesis and evaluation of inhibitors of the SARS-CoV-2 nsp3 macrodomain

Bioorganic & Medicinal Chemistry(2022)10.1016/j.bmc.2022.116788

N/A

0DataRank · unranked

30 citations

Elva E. Joya, AnnMarie Walker, Anuradha Roy, Yousef M. Alhammad, Moriama Atobatele +10 more

Substrate-selective positive allosteric modulation of PTPRD’s phosphatase by flavonols

Biochemical Pharmacology(2022)10.1016/j.bcp.2022.115109

N/A

0DataRank · unranked

10 citations

Carlissa Marez, Karol Dokładny, Jane Smoake, María Jimena Martínez, David K. Johnson +2 more

Design, Synthesis and Evaluation of Inhibitors of the SARS-CoV2 nsp3 Macrodomain

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.02.27.482176

N/A

0DataRank · unranked

1 citations

Elva E. Joya, AnnMarie Walker, Anuradha Roy, Yousef M. Alhammad, Moriama Atobatele +10 more

Discovery of compounds that inhibit SARS-CoV-2 Mac1-ADP-ribose binding by high-throughput screening

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.03.01.482536

N/A

0DataRank · unranked

1 citations

Yousef M. Alhammad, Peter R. McDonald, David K. Johnson, Junlin Zhuo, Sarah Wazir +5 more

A Borrelia burgdorferi LptD Homolog Facilitates Flipping of Surface Lipoproteins Through the Spirochetal Outer Membrane

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.12.21.521298

N/A

0DataRank · unranked

1 citations

Ankita S. Pramanik, Selene K. Swanson, David K. Johnson, Laurence Florens, Wolfram R. Zückert +1 more

The SARS-CoV-2 Conserved Macrodomain Is a Mono-ADP-Ribosylhydrolase

Journal of Virology(2020)10.1128/jvi.01969-20

N/A

0DataRank · unranked

140 citations

M.M. Kashipathy, Anuradha Roy, Jean‐Philippe Gagné, Peter R. McDonald, Philip Gao +8 more

Potent 3CLpro inhibitors effective against SARS-CoV-2 and MERS-CoV in animal models by therapeutic treatment

mBio(2023)10.1128/mbio.02878-23

N/A

0DataRank · unranked

5 citations

Yunjeong Kim, Chamandi S. Dampalla, Harry Nhat Nguyen, David K. Meyerholz, David K. Johnson +5 more

Rationally designed inhibitors of the Musashi protein-RNA interaction by hotspot mimicry

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.01.09.523326

N/A

0DataRank · unranked

4 citations

Yusuf Adeshina, Igor Bychkov, Yan Xia, Ragul Gowthaman, Sven A. Miller +10 more

Potent small molecule inhibitors against the 3C protease of foot-and-mouth disease virus

Microbiology Spectrum(2024)10.1128/spectrum.03372-23

N/A

0DataRank · unranked

4 citations

Emma Pool, Eunji Kim, Chamandi S. Dampalla, Harry Nhat Nguyen, David K. Johnson +4 more

Radiotracers for Molecular Imaging of Angiotensin-Converting Enzyme 2

International Journal of Molecular Sciences(2024)10.3390/ijms25179419

N/A

0DataRank · unranked

3 citations

Sigrid A. Langhans, David K. Johnson, Erik Stauff, Vinay Kandula, Heidi H. Kecskemethy +3 more

Use of phosphotyrosine-containing peptides to target SH2 domains: Antagonist peptides of the Crk/CrkL-p130Cas axis

Methods in enzymology on CD-ROM/Methods in enzymology(2024)10.1016/bs.mie.2024.04.013

N/A

0DataRank · unranked

2 citations

David K. Johnson, Anuradha Roy, Tae‐Ju Park, Justin T. Douglas

Mutation of a highly conserved isoleucine residue in loop 2 of several 𝛽-coronavirus macrodomains indicates that enhanced ADP-ribose binding is detrimental to infection

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.01.03.574082

N/A

0DataRank · unranked

8 citations

Jessica J. Pfannenstiel, Yousef M. Alhammad, Joseph J. O’Connor, Roshan Ghimire, Rakshya Shrestha +11 more

Borrelia burgdorferi BB0346 is an Essential, Structurally Variant LolA Homolog that is Primarily Required for Homeostatic Localization of Periplasmic Lipoproteins

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.08.06.606844

N/A

0DataRank · unranked

3 citations

Jacob J. Wiepen, Danielle E. Graham, Selene K. Swanson, M.M. Kashipathy, Anne Cooper +7 more

Identification of a series of pyrrolo-pyrimidine based SARS-CoV-2 Mac1 inhibitors that repress coronavirus replication

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.10.28.620664

N/A

0DataRank · unranked

1 citations

Men Thi Hoai Duong, Daniel Cluff, Lavania M. Sherrill, Iain Colquhoun, Gabrielle Cadoux +13 more

HSV-1 ICP0 Dimer Domain Adopts a Novel β-barrel Fold

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.01.16.575752

N/A

0DataRank · unranked

0 citations

M.M. Kashipathy, Anne Cooper, Philip Gao, David K. Johnson, K.P. Battaile +3 more

Molecular basis for the activation of the Fatty Acid Kinase complex of Staphylococcus aureus

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.03.19.585040

N/A

0DataRank · unranked

0 citations

Zhen Xu, Benjamin Ryan, Zachary DeMars, Miranda J. Ridder, David K. Johnson +9 more

Structural Evaluations of a Selective Human STINGA230 Agonist and Its Use in Macrophage Immunotherapies

ACS Medicinal Chemistry Letters(2024)10.1021/acsmedchemlett.4c00048

N/A

0DataRank · unranked

0 citations

Junxing Zhao, Ying Li, Shallu Tomer, Manikandan Selvaraju, Nicholas Tien +6 more

Advances in Molecular Imaging of VEGFRs: Innovations in Imaging and Therapeutics

International Journal of Molecular Sciences(2025)10.3390/ijms26115373

N/A

0DataRank · unranked

6 citations

Sarah Lee, Wenqi Xu, Sigrid A. Langhans, David K. Johnson, Erik Stauff +4 more

A Borrelia burgdorferi LptD homolog is required for flipping of surface lipoproteins through the spirochetal outer membrane

Molecular Microbiology(2023)10.1111/mmi.15072

N/A

0DataRank · unranked

21 citations

Ankita S. Pramanik, Selene K. Swanson, David K. Johnson, Laurence Florens, Wolfram R. Zückert +1 more

Diflunisal Derivatives as Modulators of ACMS Decarboxylase Targeting the Tryptophan–Kynurenine Pathway

Journal of Medicinal Chemistry(2020)10.1021/acs.jmedchem.0c01762

N/A

0DataRank · unranked

14 citations

Timothy Jules Borel, Francisco de Azambuja, David K. Johnson, Jacob P. Sorrentino, Chinedum Udokwu +4 more

The Structures of SctK and SctD from Pseudomonas aeruginosa Reveal the Interface of the Type III Secretion System Basal Body and Sorting Platform

Journal of Molecular Biology(2020)10.1016/j.jmb.2020.10.027

N/A

0DataRank · unranked

19 citations

Sean K. Whittier, Scott Lovell, K.P. Battaile, Shoichi Tachiyama, David K. Johnson +3 more

The Evaluation of the Containment Efficacy of Semi-Rigid Isolators for Housing Cages of Laboratory Animals Infected With BSL-3 Agents

ILAR Journal(2020)10.1093/ilar/ilab021

N/A

0DataRank · unranked

1 citations

David K. Johnson, Scott Reynolds, Rigoberto Sanchez, Robert H. Weichbrod, Matthew C Terzi +1 more

The Structures of SctK and SctD from Pseudomonas aeruginosa Reveal the Interface of the Type III Secretion System Basal Body and Sorting Platform

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.09.22.308627

N/A

0DataRank · unranked

0 citations

Sean K. Whittier, Scott Lovell, K.P. Battaile, Shoichi Tachiyama, David K. Johnson +3 more

Sulfamate-tethered aza-Wacker approach towards analogs of Bactobolin A

Medicinal Chemistry Research(2021)10.1007/s00044-021-02724-7

N/A

0DataRank · unranked

21 citations

David K. Johnson, Shyam Sathyamoorthi, Someshwar Nagamalla

Modulating β-arrestin 2 recruitment at the δ- and μ-opioid receptors using peptidomimetic ligands

RSC Medicinal Chemistry(2021)10.1039/d1md00025j

N/A

0DataRank · unranked

11 citations

Robert J. Cassell, Yazan J. Meqbil, Hongyu Su, Arryn T. Blaine, Benjamin Cummins +5 more