Haichun Yang

Guangzhou University of Chinese Medicine

Also affiliated with Guangzhou University, Guangdong Provincial Hospital of Traditional Chinese Medicine, Vanderbilt University Medical Center, Guangzhou Medical University

MedicineComputer ScienceBiochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 5%percentile

0.448Author DataRank

Indexed papers

4in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 4 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

A Lipid Atlas of the Human Kidney

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.04.07.487155

Top 51%

0.344DataRank

Top 51%6 citations

Léonore Tideman, Elizabeth K. Neumann, Nathan Heath Patterson, Lukasz G. Migas, Madeline E. Colley +18 more

Papers

Driven by 66 papers — median percentile 22. Top paper: “AI applications in renal pathology”.

AI applications in renal pathology

Kidney International(2021)10.1016/j.kint.2021.01.015

N/A

0.665DataRank · unranked

83 citations

Ruining Deng, Quan Liu, Agnes B. Fogo, Haichun Yang, Yuankai Huo

Segment Anything Model (SAM) for Digital Pathology: Assess Zero-shot Segmentation on Whole Slide Imaging

Electronic Imaging(2025)10.2352/ei.2025.37.14.coimg-132

N/A

0.581DataRank · unranked

47 citations

Can Cui, Quan Liu, Tianyuan Yao, Lucas W. Remedios, Shunxing Bao +11 more

Kidney injury-mediated disruption of intestinal lymphatics involves dicarbonyl-modified lipoproteins

Kidney International(2021)10.1016/j.kint.2021.05.028

N/A

0.477DataRank · unranked

23 citations

Haichun Yang, Valery Yermalitsky, Elaine L. Shelton, Tadashi Otsuka, Carrie B. Wiese +12 more

PrPSeg: Universal Proposition Learning for Panoramic Renal Pathology Segmentation

PubMed(2024)10.1109/cvpr52733.2024.01115

N/A

0.385DataRank · unranked

12 citations

Quan Liu, Can Cui, Tianyuan Yao, Jialin Yue, Juming Xiong +9 more

A Lipid Atlas of the Human Kidney

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.04.07.487155

Top 51%

0.344DataRank

Top 51%6 citations

Léonore Tideman, Elizabeth K. Neumann, Nathan Heath Patterson, Lukasz G. Migas, Madeline E. Colley +18 more

Podocyte-Related Mechanisms Underlying Survival Benefit of Long-Term Angiotensin Receptor Blocker

International Journal of Molecular Sciences(2022)10.3390/ijms23116018

N/A

0.292DataRank · unranked

6 citations

Dan Gao, Vittorio Albertazzi, Jianyong Zhong, Li‐Jun Ma, Liping Du +5 more

Multi-scale multi-site renal microvascular structures segmentation for whole slide imaging in renal pathology

PubMed(2024)10.1117/12.3006262

N/A

0.241DataRank · unranked

4 citations

Ruining Deng, Shunxing Bao, Haichun Yang, Yuankai Huo, Franklin Hu

Leverage weekly annotation to pixel-wise annotation via zero-shot segment anything model for molecular-empowered learning

PubMed(2024)10.1117/12.3006577

N/A

0.208DataRank · unranked

3 citations

Ruining Deng, Yucheng Tang, Shunxing Bao, Haichun Yang, Yuankai Huo +1 more

stImage: a versatile framework for optimizing spatial transcriptomic analysis through customizable deep histology and location informed integration

Briefings in Bioinformatics(2025)10.1093/bib/bbaf429

N/A

0.165DataRank · unranked

2 citations

Haichun Yang, Ruining Deng, Yuankai Huo, Qi Liu, Yu Shyr +2 more

ZeroReg3D: a zero-shot registration pipeline for 3D consecutive histopathology image reconstruction

Journal of Medical Imaging(2025)10.1117/1.jmi.12.4.044002

N/A

0.165DataRank · unranked

2 citations

Ruining Deng, Jialin Yue, Siqi Lu, Junlin Guo, Marilyn Lionts +9 more

Moving toward a better understanding of renal lymphatics: challenges and opportunities

Pediatric Nephrology(2025)10.1007/s00467-025-06692-7

N/A

0.118DataRank · unranked

1 citations

Jing Liu, Ashley Pitzer Mutchler, Haichun Yang, Annet Kirabo, Elaine L. Shelton +2 more

GLAM: Glomeruli Segmentation for Human Pathological Lesions using Adapted Mouse Model

arXiv (Cornell University)(2024)10.48550/arxiv.2407.18390

N/A

0.104DataRank · unranked

1 citations

Mengmeng Yin, Ruining Deng, Quan Liu, Tianyuan Yao, Can Cui +7 more

Spatial pathomics toolkit for quantitative analysis of podocyte nuclei with histology and spatial transcriptomics data in renal pathology

PubMed(2024)10.1117/12.3006318

N/A

0.104DataRank · unranked

1 citations

Yu Wang, Ruining Deng, Quan Liu, Can Cui, Tianyuan Yao +7 more

Compound Figure Separation of Biomedical Images: Mining Large Datasets for Self-supervised Learning

The Journal of Machine Learning for Biomedical Imaging(2022)10.59275/j.melba.2022-5aa9

Top 78%

0.104DataRank

Top 78%1 citations

Chang Qu, Jun Long, Quan Liu, Ruining Deng, Yuanhan Tian +11 more

Multi-scale Multi-site Renal Microvascular Structures Segmentation for Whole Slide Imaging in Renal Pathology

arXiv (Cornell University)(2023)10.48550/arxiv.2308.05782

N/A

0.104DataRank · unranked

1 citations

Ruining Deng, Shunxing Bao, Haichun Yang, Yuankai Huo, Franklin Hu

Democratizing Pathological Image Segmentation with Lay Annotators via Molecular-Empowered Learning

Lecture notes in computer science(2023)10.1007/978-3-031-43987-2_48

N/A

0DataRank · unranked

6 citations

Yanwei Li, Peize Li, Jiacheng Wang, Lucas W. Remedios, Saydolimkhon Agzamkhodjaev +9 more

Evaluation Kidney Layer Segmentation on Whole Slide Imaging using Convolutional Neural Networks and Transformers

arXiv (Cornell University)(2023)10.48550/arxiv.2309.02563

N/A

0DataRank · unranked

1 citations

Chenyang Qi, Shunxing Bao, Quan Liu, Ruining Deng, Yu Wang +4 more

Democratizing Pathological Image Segmentation with Lay Annotators via Molecular-empowered Learning

arXiv (Cornell University)(2023)10.48550/arxiv.2306.00047

N/A

0DataRank · unranked

0 citations

Yanwei Li, Peize Li, Jiacheng Wang, Lucas W. Remedios, Saydolimkhon Agzamkhodjaev +9 more

High-performance Data Management for Whole Slide Image Analysis in Digital Pathology

arXiv (Cornell University)(2023)10.48550/arxiv.2308.05784

N/A

0DataRank · unranked

0 citations

Ruining Deng, Shunxing Bao, Dazheng Fang, Bryan A. Millis, Yucheng Tang +6 more

In situ molecular profiles of glomerular cells by integrated imaging mass spectrometry and multiplexed immunofluorescence microscopy

Kidney International(2024)10.1016/j.kint.2024.11.008

N/A

0DataRank · unranked

19 citations

Felipe Moser, Léonore Tideman, Lukasz G. Migas, Katerina Djambazova, Madeline E. Colley +9 more

Inhibition of transcriptional coactivator YAP Impairs the expression and function of transcription factor WT1 in diabetic podocyte injury

Kidney International(2024)10.1016/j.kint.2024.01.038

N/A

0DataRank · unranked

20 citations

Xiaoyong Wang, He Qian, Haichun Yang, Agnes B. Fogo, Raymond C. Harris +1 more

Tubular CPT1A deletion minimally affects aging and chronic kidney injury

JCI Insight(2024)10.1172/jci.insight.171961

N/A

0DataRank · unranked

20 citations

Alla V. Ivanova, Yosuke Osaki, Steven D. Funk, Haichun Yang, Olga M. Viquez +17 more

HATs: Hierarchical Adaptive Taxonomy Segmentation for Panoramic Pathology Image Analysis

Lecture notes in computer science(2024)10.1007/978-3-031-72083-3_15

N/A

0DataRank · unranked

5 citations

Quan Liu, Can Cui, Tianyuan Yao, Juming Xiong, Shunxing Bao +8 more

Circle Representation for Medical Instance Object Segmentation

arXiv (Cornell University)(2024)10.48550/arxiv.2403.11507

N/A

0DataRank · unranked

0 citations

Ethan H. Nguyen, Yilin Liu, Ruining Deng, Regina N. Tyree, Hernán Correa +6 more

Evaluation kidney layer segmentation on whole slide imaging using convolutional neural networks and transformers

PubMed(2024)10.1117/12.3006865

N/A

0DataRank · unranked

0 citations

Chenyang Qi, Shunxing Bao, Quan Liu, Ruining Deng, Yu Wang +4 more

High-performance data management for whole slide image analysis in digital pathology

PubMed(2024)10.1117/12.3006273

N/A

0DataRank · unranked

0 citations

Ruining Deng, Shunxing Bao, Dazheng Fang, Bryan A. Millis, Yucheng Tang +6 more

Weighted Circle Fusion: Ensembling Circle Representation from Different Object Detection Results

arXiv (Cornell University)(2024)10.48550/arxiv.2406.19540

N/A

0DataRank · unranked

0 citations

Tianyuan Yao, Ruining Deng, Quan Liu, Juming Xiong, Guo, Junlin +3 more

Cross-Species Data Integration for Enhanced Layer Segmentation in Kidney Pathology

arXiv (Cornell University)(2024)10.48550/arxiv.2408.09278

N/A

0DataRank · unranked

0 citations

Mengmeng Yin, Ruining Deng, Yitian Long, Yu Wang, Yaohong Wang +4 more

Assessment of Cell Nuclei AI Foundation Models in Kidney Pathology

arXiv (Cornell University)(2024)10.48550/arxiv.2408.06381

N/A

0DataRank · unranked

0 citations

Siqi Lu, Can Cui, Ruining Deng, Tianyuan Yao, Tao, Zhewen +12 more

Glo-In-One-v2: Holistic Identification of Glomerular Cells, Tissues, and Lesions in Human and Mouse Histopathology

arXiv (Cornell University)(2024)10.48550/arxiv.2411.16961

N/A

0DataRank · unranked

0 citations

Mengmeng Yin, Ruining Deng, Quan Liu, Tianyuan Yao, Can Cui +7 more

GloFinder: AI-empowered QuPath Plugin for WSI-level Glomerular Detection, Visualization, and Curation

arXiv (Cornell University)(2024)10.48550/arxiv.2411.18795

N/A

0DataRank · unranked

0 citations

Tianyuan Yao, Ruining Deng, Siqi Lu, Junlin Guo, Quan Liu +5 more

Glo-In-One-v2: holistic identification of glomerular cells, tissues, and lesions in human and mouse histopathology

Journal of Medical Imaging(2025)10.1117/1.jmi.12.6.061406

N/A

0DataRank · unranked

5 citations

Mengmeng Yin, Ruining Deng, Quan Liu, Tianyuan Yao, Can Cui +7 more

Evaluating cell AI foundation models in kidney pathology with human-in-the-loop enrichment

Communications Medicine(2025)10.1038/s43856-025-01205-x

N/A

0DataRank · unranked

4 citations

Siqi Lu, Can Cui, Ruining Deng, Tianyuan Yao, Zhewen Tao +13 more

GloFinder: AI-empowered QuPath plugin for WSI-level glomerular detection, visualization, and curation

Journal of Pathology Informatics(2025)10.1016/j.jpi.2025.100433

N/A

0DataRank · unranked

4 citations

Tianyuan Yao, Ruining Deng, Siqi Lu, Junlin Guo, Quan Liu +5 more

Assessment of cell nuclei AI foundation models in kidney pathology

PubMed(2025)10.1117/12.3047301

N/A

0DataRank · unranked

3 citations

Siqi Lu, Can Cui, Ruining Deng, Tianyuan Yao, Zhewen Tao +12 more

Towards fine-grained renal vasculature segmentation: full-scale hierarchical learning with FH-Seg

PubMed(2025)10.1117/12.3046532

N/A

0DataRank · unranked

1 citations

Zhongze Wu, Xiu Su, Lining Yu, Ruining Deng, Haichun Yang +2 more

Pirfenidone treatment attenuates fibrosis in autosomal dominant polycystic kidney disease

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.08.25.672225

N/A

0DataRank · unranked

1 citations

Abeda Jamadar, Meekha M. Varghese, Haichun Yang, Sumedha Gunewardena, Darren P Wallace +2 more

PySpatial: A High-Speed Whole Slide Image Pathomics Toolkit

arXiv (Cornell University)(2025)10.48550/arxiv.2501.06151

N/A

0DataRank · unranked

0 citations

Yu Wang, Tianyuan Yao, Ruining Deng, Mengmeng Yin, Shilin Zhao +3 more

PySpatial: A high-speed whole slide image pathomics toolkit

Electronic Imaging(2025)10.2352/ei.2025.37.12.hpci-177

N/A

0DataRank · unranked

0 citations

Yu Wang, Tianyuan Yao, Ruining Deng, Mengmeng Yin, Shilin Zhao +3 more

Towards Fine-grained Renal Vasculature Segmentation: Full-Scale Hierarchical Learning with FH-Seg

arXiv (Cornell University)(2025)10.48550/arxiv.2502.05320

N/A

0DataRank · unranked

0 citations

Zhongze Wu, Xiu Su, Lining Yu, Ruining Deng, Haichun Yang +2 more

CASC-AI: Consensus-aware Self-corrective Learning for Noise Cell Segmentation

arXiv (Cornell University)(2025)10.48550/arxiv.2502.07302

N/A

0DataRank · unranked

0 citations

Yihe Yang, David J. Pisapia, Benjamin Liechty, Junchao Zhu, Juming Xiong +13 more

KPIs 2024 Challenge: Advancing Glomerular Segmentation from Patch- to Slide-Level

arXiv (Cornell University)(2025)10.48550/arxiv.2502.07288

Top 100%

0DataRank

Top 100%0 citations

Tianyuan Yao, Yucheng Tang, Junlin Guo, Siqi Lu, Juming Xiong +42 more

GLAM: glomeruli segmentation for human pathological lesions using adapted mouse model

PubMed(2025)10.1117/12.3046823

N/A

0DataRank · unranked

0 citations

Mengmeng Yin, Ruining Deng, Quan Liu, Tianyuan Yao, Can Cui +7 more

DyMorph-B2I: Dynamic and Morphology-Guided Binary-to-Instance Segmentation for Renal Pathology

arXiv (Cornell University)(2025)10.48550/arxiv.2508.15208

N/A

0DataRank · unranked

0 citations

Yang, Yuechen, Zhu, Yanfan, Haichun Yang, Yuankai Huo, Paul D. Simonson +5 more

Computer Vision Methods for Spatial Transcriptomics: A Survey

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.10.13.682148

N/A

0DataRank · unranked

0 citations

Ruining Deng, Junlin Guo, Tianyuan Yao, Siqi Lu, Chongyu Qu +12 more

Fine-grained multiclass nuclei segmentation with molecular empowered all-in-SAM model

Journal of Medical Imaging(2025)10.1117/1.jmi.12.5.057501

N/A

0DataRank · unranked

0 citations

Can Cui, Ruining Deng, Yucheng Tang, Quan Liu, Tianyuan Yao +5 more

Img2ST-Net: Efficient High-Resolution Spatial Omics Prediction from Whole Slide Histology Images via Fully Convolutional Image-to-Image Learning

arXiv (Cornell University)(2025)10.48550/arxiv.2508.14393

N/A

0DataRank · unranked

0 citations

Ruining Deng, Junlin Guo, Tianyuan Yao, Juming Xiong, Chongyu Qu +8 more

Circle Representation for Medical Instance Object Segmentation

The Journal of Machine Learning for Biomedical Imaging(2025)10.59275/j.melba.2025-8bad

N/A

0DataRank · unranked

0 citations

Ethan H. Nguyen, Yilin Liu, Ruining Deng, Regina N. Tyree, Hernán Correa +6 more

Quantitative benchmarking of anomaly detection methods in digital pathology images

Machine Learning Health(2025)10.1088/3049-477x/ae0f9f

N/A

0DataRank · unranked

0 citations

Xindong Zheng, Ruining Deng, Quan Liu, Tianyuan Yao, Keith T. Wilson +6 more

Fine-grained Multi-class Nuclei Segmentation with Molecular-empowered All-in-SAM Model

arXiv (Cornell University)(2025)10.48550/arxiv.2508.15751

N/A

0DataRank · unranked

0 citations

Can Cui, Ruining Deng, Yucheng Tang, Quan Liu, Tianyuan Yao +5 more

Tubular β-catenin and FoxO3 interactions protect in chronic kidney disease

JCI Insight(2020)10.1172/jci.insight.135454

N/A

0DataRank · unranked

35 citations

Yosuke Osaki, Lauren Scarfe, Haichun Yang, Melanie Phillips-Mignemi, Jane Tonello +12 more

Non-standard reporting of sex and ethnicity terms in acupuncture randomized controlled trials

Integrative Medicine Research(2026)10.1016/j.imr.2026.101353

N/A

0DataRank · unranked

0 citations

Yuening Deng, Yucheng Feng, Haichun Yang, Yuejuan Cai, Lin Shi +7 more

Renal lymphatic vessel dynamics

American Journal of Physiology-Renal Physiology(2020)10.1152/ajprenal.00322.2020

N/A

0DataRank · unranked

22 citations

Haichun Yang, Jianyong Zhong, Michele M. Salzman, Valentina Kon, Elaine L. Shelton

Stabilization of hypoxia-inducible factor ameliorates glomerular injury sensitization after tubulointerstitial injury

Kidney International(2020)10.1016/j.kint.2020.09.031

N/A

0DataRank · unranked

16 citations

Jae Won Yang, Xiaoye Zhu, Jianyong Zhong, Ahmed Nagah El-Shaer, Taiji Matsusaka +5 more

DDR1 contributes to kidney inflammation and fibrosis by promoting the phosphorylation of BCR and STAT3

JCI Insight(2021)10.1172/jci.insight.150887

N/A

0DataRank · unranked

64 citations

Gema Bolás, Fabian Bock, Xiuqi Zhang, Favour C. Akabogu, Ming‐Zhi Zhang +10 more

Adapting decarbonylation chemistry for the development of prodrugs capable of in vivo delivery of carbon monoxide utilizing sweeteners as carrier molecules

Chemical Science(2021)10.1039/d1sc02711e

N/A

0DataRank · unranked

42 citations

Xiaoxiao Yang, Anna Menshikh, Maya Brewer, Wen Lu, Minjia Wang +10 more

Protocol for multimodal analysis of human kidney tissue by imaging mass spectrometry and CODEX multiplexed immunofluorescence

STAR Protocols(2021)10.1016/j.xpro.2021.100747

N/A

0DataRank · unranked

29 citations

Nathan Heath Patterson, Jamie Allen, Lukasz G. Migas, Haichun Yang, Maya Brewer +10 more

High-Density Lipoproteins in Kidney Disease

International Journal of Molecular Sciences(2021)10.3390/ijms22158201

N/A

0DataRank · unranked

24 citations

Haichun Yang, Loren E. Smith, Kasey C. Vickers, MacRae F. Linton, Valentina Kon

Increased dishevelled associated activator of morphogenesis 2, a new podocyte-associated protein, in diabetic nephropathy

Nephrology Dialysis Transplantation(2021)10.1093/ndt/gfab014

N/A

0DataRank · unranked

5 citations

Faten AlSomali, Jinyong Zhong, Raymond C. Harris, Valentina Kon, Haichun Yang +2 more

Improve Global Glomerulosclerosis Classification with Imbalanced Data using CircleMix Augmentation

arXiv (Cornell University)(2021)10.48550/arxiv.2101.07654

N/A

0DataRank · unranked

0 citations

Haichun Yang, Zheyu Zhu, Ruining Deng, Agnes B. Fogo, Yuankai Huo +1 more

Blocking cell cycle progression through CDK4/6 protects against chronic kidney disease

JCI Insight(2022)10.1172/jci.insight.158754

N/A

0DataRank · unranked

33 citations

Marika Manolopoulou, Alla V. Ivanova, Nicholas Vartanian, Melanie Phillips Mignemi, Justin L. Kern +7 more

Dicarbonyl-modified lipoproteins contribute to proteinuric kidney injury

JCI Insight(2022)10.1172/jci.insight.161878

N/A

0DataRank · unranked

12 citations

Haichun Yang, Elaine L. Shelton, Taiji Matsusaka, Amanda J. Clark, Valery Yermalitsky +8 more

Omni-Seg: A Scale-Aware Dynamic Network for Renal Pathological Image Segmentation

IEEE Transactions on Biomedical Engineering(2023)10.1109/tbme.2023.3260739

N/A

0DataRank · unranked

38 citations

Quan Liu, Can Cui, Tianyuan Yao, Jun Long, Zuhayr Asad +7 more

Intestinal Lymphatic Dysfunction in Kidney Disease

Circulation Research(2023)10.1161/circresaha.122.321671

N/A

0DataRank · unranked

15 citations

Annet Kirabo, Haichun Yang, Agnes B. Fogo, Elaine L. Shelton, Valentina Kon +1 more

Low-Dose Erythropoietin Amplifies Beneficial Effects of Angiotensin II Blockade on Glomerulosclerosis

Laboratory Investigation(2023)10.1016/j.labinv.2022.100015

N/A

0DataRank · unranked

1 citations

Keizo Matsushita, Jianyong Zhong, Li‐Jun Ma, Haichun Yang, Agnes B. Fogo +1 more

Segment Anything Model (SAM) for Digital Pathology: Assess Zero-shot Segmentation on Whole Slide Imaging

arXiv (Cornell University)(2023)10.48550/arxiv.2304.04155

N/A

0DataRank · unranked

97 citations

Can Cui, Quan Liu, Tianyuan Yao, Lucas W. Remedios, Shunxing Bao +11 more

Haichun Yang

Indexed papers

Top data-sharing exemplar

Papers