Taylor Adams

MedicineBiochemistry, Genetics and Molecular BiologyImmunology and Microbiology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 3%percentile

1.1Author DataRank

Indexed papers

1in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 1 indexed paper attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Integrated Single Cell Atlas of Endothelial Cells of the Human Lung

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.10.21.347914

Top 19%

1.1DataRank

Top 19%32 citations

Taylor Adams, Carlos Cosme, Micha Sam Brickman Raredon, Norihito Omote, Sergio Poli +22 more

Papers

Driven by 57 papers — median percentile 81. Top paper: “Single-cell meta-analysis of SARS-CoV-2 entry genes across tissues and demographics”.

Single-cell meta-analysis of SARS-CoV-2 entry genes across tissues and demographics

Nature Medicine(2021)10.1038/s41591-020-01227-z

N/A

8.2DataRank · unranked

378 citations

Malte D. Luecken, Gökcen Eraslan, Lisa Sikkema, Avinash Waghray, Graham Heimberg +95 more

Chronic lung diseases are associated with gene expression programs favoring SARS-CoV-2 entry and severity

Nature Communications(2021)10.1038/s41467-021-24467-0

N/A

2.0DataRank · unranked

43 citations

Nichelle I. Winters, Mei-i Chung, Chitra Joseph, Austin J. Gutierrez, Arun C. Habermann +67 more

Transcriptomics of bronchoalveolar lavage cells identifies new molecular endotypes of sarcoidosis

European Respiratory Journal(2021)10.1183/13993003.02950-2020

N/A

1.2DataRank · unranked

58 citations

Xiting Yan, Kevin F. Gibson, Mridu Gulati, Jonas C. Schupp, Giuseppe DeIuliis +24 more

Single-cell RNA-seq reveals ectopic and aberrant lung-resident cell populations in idiopathic pulmonary fibrosis

Science Advances(2020)10.1126/sciadv.aba1983

N/A

1.1DataRank · unranked

1447 citations

Jonas C. Schupp, Sergio Poli, Ehab Ayaub, Nir Neumark, Farida Ahangari +13 more

Integrated Single Cell Atlas of Endothelial Cells of the Human Lung

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.10.21.347914

Top 19%

1.1DataRank

Top 19%32 citations

Taylor Adams, Carlos Cosme, Micha Sam Brickman Raredon, Norihito Omote, Sergio Poli +22 more

Characterization of the COPD alveolar niche using single-cell RNA sequencing

Nature Communications(2022)10.1038/s41467-022-28062-9

N/A

0.816DataRank · unranked

229 citations

John E. McDonough, Taylor Adams, Neeharika Kothapalli, Thomas Bärnthaler, Rhiannon B. Werder +21 more

Saracatinib, a Selective Src Kinase Inhibitor, Blocks Fibrotic Responses in Preclinical Models of Pulmonary Fibrosis

American Journal of Respiratory and Critical Care Medicine(2022)10.1164/rccm.202010-3832oc

N/A

0.718DataRank · unranked

119 citations

Christine Becker, Daniel G. Foster, Maurizio Chioccioli, Meghan Nelson, K.M. Beke +29 more

microRNA-33 deficiency in macrophages enhances autophagy, improves mitochondrial homeostasis, and protects against lung fibrosis

JCI Insight(2023)10.1172/jci.insight.158100

N/A

0.624DataRank · unranked

63 citations

Nathan L. Price, Shipra Malik, Maurizio Chioccioli, Thomas Bärnthaler, Taylor Adams +22 more

Emergence of division of labor in tissues through cell interactions and spatial cues

Cell Reports(2023)10.1016/j.celrep.2023.112412

N/A

0.604DataRank · unranked

55 citations

Noa Moriel, Aleksandrina Goeva, Inbal Avraham‐Davidi, Simon Mages, Taylor Adams +6 more

Fibroblasts positive for meflin have anti-fibrotic properties in pulmonary fibrosis

European Respiratory Journal(2021)10.1183/13993003.03397-2020

N/A

0.598DataRank · unranked

53 citations

Naozumi Hashimoto, Koji Sakamoto, Atsushi Enomoto, Taylor Adams, Toyoharu Yokoi +15 more

Viral and host mediators of non-suppressible HIV-1 viremia

Nature Medicine(2023)10.1038/s41591-023-02611-1

N/A

0.587DataRank · unranked

49 citations

Behzad Etemad, Xin Zhang, Yijia Li, Gregory J. Bedwell, Radwa Sharaf +35 more

Single-Cell Analysis Reveals Novel Immune Perturbations in Fibrotic Hypersensitivity Pneumonitis

American Journal of Respiratory and Critical Care Medicine(2024)10.1164/rccm.202401-0078oc

N/A

0.568DataRank · unranked

43 citations

Avraham Unterman, Nebal Abu Hussein, Prapti Sharma, Fadi Nikola, Jasper Flint +20 more

Lung Cell Atlases in Health and Disease

Annual Review of Physiology(2022)10.1146/annurev-physiol-032922-082826

N/A

0.515DataRank · unranked

30 citations

Arnaud Marlier, Naftali Kaminski, Taylor Adams

Connectome : computation and visualization of cell-cell signaling topologies in single-cell systems data

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.01.21.427529

N/A

0.494DataRank · unranked

26 citations

Junchen Yang, James Garritano, Meng Wang, Dan Kushnir, Jonas C. Schupp +8 more

Mast-cell expressed membrane protein-1 is expressed in classical monocytes and alveolar macrophages in idiopathic pulmonary fibrosis and regulates cell chemotaxis, adhesion, and migration in a TGFβ-dependent manner

American Journal of Physiology-Cell Physiology(2024)10.1152/ajpcell.00563.2023

N/A

0.477DataRank · unranked

23 citations

Τheodoros Karampitsakos, Avraham Unterman, Taylor Adams, K. Marlin, Alyssa Arsenault +7 more

Single-cell transcriptomic analysis of human pleura reveals stromal heterogeneity and informsin vitromodels of mesothelioma

European Respiratory Journal(2024)10.1183/13993003.00143-2023

N/A

0.466DataRank · unranked

12 citations

José Antonio Valer, Reshma Nibhani, Taylor Adams, Jonas C. Schupp, Niki Veale +14 more

Increased expression of CXCL6 in secretory cells drives fibroblast collagen synthesis and is associated with increased mortality in idiopathic pulmonary fibrosis

European Respiratory Journal(2023)10.1183/13993003.00088-2023

N/A

0.464DataRank · unranked

21 citations

Jiangning Tan, Rosa Marie Apel, Benjamin Seeliger, Jonas C. Schupp, Xiaoyun Li +24 more

A deep generative model for deciphering cellular dynamics and in silico drug discovery in complex diseases

Nature Biomedical Engineering(2025)10.1038/s41551-025-01423-7

N/A

0.457DataRank · unranked

20 citations

Jonas C. Schupp, Taylor Adams, Gérémy Clair, A. Justet, Farida Ahangari +17 more

Single-cell characterization of a model of poly I:C-stimulated peripheral blood mononuclear cells in severe asthma

Respiratory Research(2021)10.1186/s12931-021-01709-9

N/A

0.449DataRank · unranked

19 citations

Maria P. Diaz-Soto, Miguel F. Sanmamed, Taylor Adams, Jonas C. Schupp, Amolika Gupta +9 more

A Pulmonary Vascular Model From Endothelialized Whole Organ Scaffolds

Frontiers in Bioengineering and Biotechnology(2021)10.3389/fbioe.2021.760309

N/A

0.406DataRank · unranked

14 citations

Katherine L. Leiby, Allison M. Greaney, Micha Sam Brickman Raredon, Hong Qian, Jonas C. Schupp +10 more

Keratinocytes as active regulators of cutaneous and mucosal immunity: a systematic review across inflammatory epithelial disorders

Frontiers in Immunology(2025)10.3389/fimmu.2025.1694066

N/A

0.396DataRank · unranked

13 citations

Yizhuo Shen, Federico Repetto, Stav Brown, Leonard Knoedler, Christine J. Ko +10 more

iDESC: identifying differential expression in single-cell RNA sequencing data with multiple subjects

BMC Bioinformatics(2023)10.1186/s12859-023-05432-8

N/A

0.396DataRank · unranked

13 citations

Jiayi Zhao, Taylor Adams, Ningya Wang, Jonas C. Schupp, Weimiao Wu +6 more

Integrative analyses for the identification of idiopathic pulmonary fibrosis-associated genes and shared loci with other diseases

Thorax(2022)10.1136/thorax-2021-217703

N/A

0.373DataRank · unranked

11 citations

Yiliang Zhang, Taylor Adams, Dingjue Ji, Wei Jiang, Louise V. Wain +4 more

Microenvironmental Sensing by Fibroblasts Controls Macrophage Population Size

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.01.18.476683

N/A

0.373DataRank · unranked

11 citations

Ruth A. Franklin, Miri Adler, Trevor S. Carter, Emily Condiff, Taylor Adams +6 more

Chronic lung diseases are associated with gene expression programs favoring SARS-CoV-2 entry and severity

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.10.20.347187

N/A

0.345DataRank · unranked

9 citations

Nichelle I. Winters, Mei-i Chung, Chitra Joseph, Austin J. Gutierrez, Arun C. Habermann +17 more

Gene coexpression networks reveal novel molecular endotypes in alpha-1 antitrypsin deficiency

Thorax(2020)10.1136/thoraxjnl-2019-214301

N/A

0.345DataRank · unranked

9 citations

Wenlan Zang, Milica Vukmirovic, Xiting Yan, Taylor Adams, Giuseppe DeIuliis +20 more

SDePER: a hybrid machine learning and regression method for cell-type deconvolution of spatial barcoding-based transcriptomic data

Genome biology(2024)10.1186/s13059-024-03416-2

N/A

0.330DataRank · unranked

8 citations

Ningshan Li, Ji Qi, Gang Xu, Jiayi Zhao, Nating Wang +12 more

Single Cell Transcriptional Archetypes of Airway Inflammation in Cystic Fibrosis

medRxiv(2020)10.1101/2020.03.06.20032292

N/A

0.292DataRank · unranked

6 citations

Sara Khanal, José L. Gómez, Maor Sauler, Taylor Adams, Geoffrey Chupp +10 more

A hybrid machine learning and regression method for cell type deconvolution of spatial barcoding-based transcriptomic data

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.08.24.554722

N/A

0.273DataRank · unranked

3 citations

Ningshan Li, Ji Qi, Gang Xu, Jiayi Zhao, Nating Wang +11 more

Emergence of division of labor in tissues through cell interactions and spatial cues

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.11.16.516540

N/A

0.269DataRank · unranked

5 citations

Noa Moriel, Aleksandrina Goeva, Inbal Avraham‐Davidi, Simon Mages, Taylor Adams +6 more

Single-cell RNA Sequencing Analysis of Sputum Cell Transcriptomes Reveals Pathways and Communication Networks That Contribute to the Pathogenesis of Asthma

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.03.31.646405

N/A

0.241DataRank · unranked

3 citations

Qing Liu, Taylor Adams, Jonas C. Schupp, Sihan Li, Stark Huang +9 more

A Markov Random Field Model for Network-based Differential Expression Analysis of Single-cell RNA-seq Data

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.11.11.378976

N/A

0.168DataRank · unranked

2 citations

Biqing Zhu, Zhichao Xu, Taylor Adams, Naftali Kaminski, Luca Pinello +1 more

Dendritic Cell – Fibroblast Crosstalk via TLR9 and AHR Signaling Drives Lung Fibrogenesis

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.03.15.584457

N/A

0.165DataRank · unranked

2 citations

Rita Medina Costa, Taylor Adams, Talon M. Gilchrist, Claire E. Emch, Monica Bame +7 more

CINS: Cell Interaction Network inference from Single cell expression data

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.02.22.432206

N/A

0DataRank · unranked

4 citations

Carlos Cosme, Taylor Adams, Jonas C. Schupp, Koji Sakamoto, Nikos Xylourgidis +4 more

Circulating Mitochondrial DNA Is Associated With High Levels of Fatigue in Two Independent Sarcoidosis Cohorts

CHEST Journal(2023)10.1016/j.chest.2023.11.020

N/A

0DataRank · unranked

2 citations

Buqu Hu, Ying Sun, Sheeline Yu, John McGovern, Shifa Gandhi +10 more

Viral and Host Mediators of Non-Suppressible HIV-1 Viremia

medRxiv(2023)10.1101/2023.03.30.23287124

N/A

0DataRank · unranked

6 citations

Behzad Etemad, Xin Zhang, Yijia Li, Gregory J. Bedwell, Radwa Sharaf +31 more

Mast-Cell Expressed Membrane Protein-1 (MCEMP1) is expressed in classical monocytes and alveolar macrophages in Idiopathic Pulmonary Fibrosis and regulates cell chemotaxis, adhesion, and migration in a TGFβ dependent manner

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.10.07.561349

N/A

0DataRank · unranked

2 citations

Τheodoros Karampitsakos, Avraham Unterman, Taylor Adams, K. Marlin, Alyssa Arsenault +7 more

Airway Basal Cells show a dedifferentiated KRT17 high Phenotype and promote Fibrosis in Idiopathic Pulmonary Fibrosis

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.09.04.283408

N/A

0DataRank · unranked

7 citations

Jonas C. Schupp, Linda Plappert, Oliver Terwolbeck, Gian Kayser, Peggy Engelhard +13 more

Dedifferentiated early postnatal lung myofibroblasts redifferentiate in adult disease

Frontiers in Cell and Developmental Biology(2024)10.3389/fcell.2024.1335061

N/A

0DataRank · unranked

9 citations

Taylor Adams, Inamul Kabir, Eunate Gallardo‐Vara, Naftali Kaminski, Brigitte N. Gomperts +2 more

Predicting lung aging using scRNA-Seq data

PLoS Computational Biology(2024)10.1371/journal.pcbi.1012632

N/A

0DataRank · unranked

2 citations

A Singh, John E. McDonough, Taylor Adams, Robin Vos, Ruben De Man +10 more

Platform Effects on Regeneration by Pulmonary Basal Cells as Evaluated by Single-Cell RNA Sequencing

Cell Reports(2020)10.1016/j.celrep.2020.03.004

N/A

0DataRank · unranked

54 citations

Taylor Adams, Micha Sam Brickman Raredon, Elise Gubbins, Jonas C. Schupp, Alexander J. Engler +5 more

CD103+ dendritic cell–fibroblast crosstalk via TLR9, TDO2, and AHR signaling drives lung fibrogenesis

JCI Insight(2025)10.1172/jci.insight.177072

N/A

0DataRank · unranked

14 citations

Rita Medina Costa, Taylor Adams, Talon M. Gilchrist, Claire E. Emch, Monica Bame +8 more

Epigenetic age acceleration in idiopathic pulmonary fibrosis revealed by DNA methylation clocks

American Journal of Physiology-Lung Cellular and Molecular Physiology(2025)10.1152/ajplung.00171.2024

N/A

0DataRank · unranked

10 citations

Farida Ahangari, Taylor Adams, Ruben De Man, Jessica Tang, Marianne Carlon +9 more

Rational engineering of lung alveolar epithelium

npj Regenerative Medicine(2023)10.1038/s41536-023-00295-2

N/A

0DataRank · unranked

26 citations

Yifan Yuan, Ronald Ng, Micha Sam Brickman Raredon, Taylor Adams, Pavlina Baevova +7 more

High CXCL6 drives matrix expression and correlate with markers of poor outcome in IPF

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.06.22.449424

N/A

0DataRank · unranked

1 citations

Jiangning Tan, Rosa Marie Apel, Benjamin Seeliger, Xiaoyun Li, Ting‐Yun Chen +19 more

Cell-Specific Transcriptome of the COPD Alveolar Niche

Research Square(2021)10.21203/rs.3.rs-276195/v1

N/A

0DataRank · unranked

0 citations

John E. McDonough, Taylor Adams, Neeharika Kotahpalli, Jonas C. Schupp, Thomas Bärnthaler +19 more

Long noncoding RNA TINCR is a novel regulator of human bronchial epithelial cell differentiation state

Physiological Reports(2021)10.14814/phy2.14727

N/A

0DataRank · unranked

10 citations

Koji Sakamoto, Qin Li, Jonas C. Schupp, Taylor Adams, Farida Ahangari +6 more

Airway basal cells show a dedifferentiated KRT17highPhenotype and promote fibrosis in idiopathic pulmonary fibrosis

Nature Communications(2022)10.1038/s41467-022-33193-0

N/A

0DataRank · unranked

146 citations

Jonas C. Schupp, Linda Plappert, Oliver Terwolbeck, Nataliia Artysh, Gian Kayser +14 more

Computation and visualization of cell–cell signaling topologies in single-cell systems data using Connectome

Scientific Reports(2022)10.1038/s41598-022-07959-x

N/A

0DataRank · unranked

140 citations

Junchen Yang, James Garritano, Meng Wang, Dan Kushnir, Jonas C. Schupp +8 more

A Markov random field model for network-based differential expression analysis of single-cell RNA-seq data

BMC Bioinformatics(2021)10.1186/s12859-021-04412-0

N/A

0DataRank · unranked

13 citations

Biqing Zhu, Zhichao Xu, Taylor Adams, Naftali Kaminski, Luca Pinello +1 more

CD38 Mediates Lung Fibrosis by Promoting Alveolar Epithelial Cell Aging

American Journal of Respiratory and Critical Care Medicine(2022)10.1164/rccm.202109-2151oc

N/A

0DataRank · unranked

69 citations

Na Xie, Sami Banerjee, Tapan Dey, Rui-Ming Liu, Veena B. Antony +7 more

Single-cell RNA-seq uncovers cellular heterogeneity and provides a signature for paediatric sleep apnoea

European Respiratory Journal(2022)10.1183/13993003.01465-2022

N/A

0DataRank · unranked

30 citations

Taylor Adams, K. Cataldo, Justin Hummel, Naftali Kaminski, David Gozal +2 more

CINS: Cell Interaction Network inference from Single cell expression data

PLoS Computational Biology(2022)10.1371/journal.pcbi.1010468

N/A

0DataRank · unranked

10 citations

Carlos Cosme, Taylor Adams, Jonas C. Schupp, Koji Sakamoto, Nikos Xylourgidis +5 more

iDESC: Identifying differential expression in single-cell RNA sequencing data with multiple subjects

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.02.07.479293

N/A

0DataRank · unranked

1 citations

Ningya Wang, Taylor Adams, Jonas C. Schupp, Weimiao Wu, John E. McDonough +5 more

In vitro engineering of the lung alveolus

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.03.13.484143

N/A

0DataRank · unranked

1 citations

Yifan Yuan, Ronald Ng, Micha Sam Brickman Raredon, Taylor Adams, Pavlina Baevova +6 more

Chronic lung diseases are associated with gene expression programs favoring SARS-CoV-2 entry and severity

Research Square(2020)10.21203/rs.3.rs-119865/v1

N/A

0DataRank · unranked

4 citations

Nichelle I. Winters, Mei-i Chung, Chitra Joseph, Austin J. Gutierrez, Arun C. Habermann +16 more

Transcriptomics of Bronchoalveolar Lavage Cells Identifies New Molecular Endotypes of Sarcoidosis

medRxiv(2020)10.1101/2020.07.24.20161448

N/A

0DataRank · unranked

5 citations

Xiting Yan, Kevin F. Gibson, Mridu Gulati, Jonas C. Schupp, Giuseppe DeIuliis +24 more

Taylor Adams

Indexed papers

Top data-sharing exemplar

Papers