Andrew Rambaut

Immunology and MicrobiologyMedicineBiochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 4%percentile

0.704Author DataRank

Indexed papers

1in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 1 indexed paper attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Mapping of HIV-1C Transmission Networks Reveals Extensive Spread of Viral Lineages Across Villages in Botswana Treatment-as-Prevention Trial

The Journal of Infectious Diseases(2020)10.1093/infdis/jiaa276

Top 28%

0.704DataRank

Top 28%17 citations

Melissa Zahralban-Steele, Sikhulile Moyo, Tapiwa Nkhisang, Dorcas Maruapula, Mary Fran McLane +45 more

Papers

Driven by 53 papers — median percentile 72. Top paper: “Emergence of SARS-CoV-2 Omicron lineages BA.4 and BA.5 in South Africa”.

Emergence of SARS-CoV-2 Omicron lineages BA.4 and BA.5 in South Africa

Nature Medicine(2022)10.1038/s41591-022-01911-2

N/A

14.5DataRank · unranked

697 citations

Monika Moir, Josie Everatt, Marta Giovanetti, Cathrine Scheepers, Eduan Wilkinson +90 more

BEAST: Bayesian evolutionary analysis by sampling trees

BMC Evolutionary Biology(2007)10.1186/1471-2148-7-214

N/A

1.4DataRank · unranked

13047 citations

Andrew Rambaut, Alexei J. Drummond

Posterior Summarization in Bayesian Phylogenetics Using Tracer 1.7

Systematic Biology(2018)10.1093/sysbio/syy032

N/A

1.4DataRank · unranked

11020 citations

Alexei J. Drummond, Dong Xie, Guy Baele, Marc A. Suchard, Andrew Rambaut

Bayesian Phylogenetics with BEAUti and the BEAST 1.7

Molecular Biology and Evolution(2012)10.1093/molbev/mss075

N/A

1.4DataRank · unranked

10366 citations

Marc A. Suchard, Dong Xie, Andrew Rambaut, Alexei J. Drummond

BEAST 2: A Software Platform for Bayesian Evolutionary Analysis

PLoS Computational Biology(2014)10.1371/journal.pcbi.1003537

N/A

1.3DataRank · unranked

6924 citations

Joseph Heled, Denise Kühnert, Tim Vaughan, Chieh-Hsi Wu, Dong Xie +5 more

Relaxed Phylogenetics and Dating with Confidence

PLoS Biology(2006)10.1371/journal.pbio.0040088

N/A

1.3DataRank · unranked

6564 citations

Simon Y. W. Ho, Matthew J. Phillips, Andrew Rambaut, Alexei J. Drummond

Genomic assessment of invasion dynamics of SARS-CoV-2 Omicron BA.1

Science(2023)10.1126/science.adg6605

N/A

1.3DataRank · unranked

70 citations

John T. McCrone, Ben Lambert, Sumali Bajaj, Rhys Inward, Paolo Bosetti +35 more

Circulating SARS-CoV-2 spike N439K variants maintain fitness while evading antibody-mediated immunity

Cell(2021)10.1016/j.cell.2021.01.037

N/A

0.974DataRank · unranked

660 citations

Laura E. Rosen, James G. Shepherd, Roberto Spreafico, Ana da Silva Filipe, Jason A. Wojcechowskyj +61 more

BEAST X for Bayesian phylogenetic, phylogeographic and phylodynamic inference

Nature Methods(2025)10.1038/s41592-025-02751-x

N/A

0.960DataRank · unranked

72 citations

Xiang Ji, Gabriel W. Hassler, John T. McCrone, Yucai Shao, Zhenyu Zhang +6 more

The Huanan Seafood Wholesale Market in Wuhan was the early epicenter of the COVID-19 pandemic

Science(2022)10.1126/science.abp8715

N/A

0.913DataRank · unranked

439 citations

Joshua I. Levy, Lorena M. Malpica Serrano, Alexander Crits‐Christoph, Jonathan E. Pekar, Stephen A. Goldstein +13 more

SARS-CoV-2 Variants of Interest and Concern naming scheme conducive for global discourse

Nature Microbiology(2021)10.1038/s41564-021-00932-w

N/A

0.863DataRank · unranked

315 citations

Mark D. Perkins, Jens H. Kuhn, Mark J. Pallen, Erik Alm, Brett N. Archer +42 more

COVID-19 in health-care workers in three hospitals in the south of the Netherlands: a cross-sectional study

The Lancet Infectious Diseases(2020)10.1016/s1473-3099(20)30527-2

N/A

0.845DataRank · unranked

278 citations

Suzan D. Pas, David F. Nieuwenhuijse, Áine O’Toole, Jaco J. Verweij, Anne van der Linden +23 more

GWAS and meta-analysis identifies 49 genetic variants underlying critical COVID-19

Nature(2023)10.1038/s41586-023-06034-3

N/A

0.795DataRank · unranked

199 citations

Konrad Rawlik, Andrew D. Bretherick, Ting Qi, Yang Wu, Isar Nassiri +3013 more

Accommodating individual travel history and unsampled diversity in Bayesian phylogeographic inference of SARS-CoV-2

Nature Communications(2020)10.1038/s41467-020-18877-9

N/A

0.784DataRank · unranked

185 citations

Samuel L. Hong, Verity Hill, Guy Baele, Chiara Poletto, Vittoria Colizza +8 more

Gradients Do Grow on Trees: A Linear-TimeO(N)-Dimensional Gradient for Statistical Phylogenetics

Molecular Biology and Evolution(2020)10.1093/molbev/msaa130

N/A

0.736DataRank · unranked

43 citations

Zhenyu Zhang, Andrew J. Holbrook, Akihiko Nishimura, Guy Baele, Andrew Rambaut +3 more

Mapping of HIV-1C Transmission Networks Reveals Extensive Spread of Viral Lineages Across Villages in Botswana Treatment-as-Prevention Trial

The Journal of Infectious Diseases(2020)10.1093/infdis/jiaa276

Top 28%

0.704DataRank

Top 28%17 citations

Melissa Zahralban-Steele, Sikhulile Moyo, Tapiwa Nkhisang, Dorcas Maruapula, Mary Fran McLane +45 more

An early warning system for emerging SARS-CoV-2 variants

Nature Medicine(2022)10.1038/s41591-022-01836-w

N/A

0.680DataRank · unranked

92 citations

Anne von Gottberg, Lipi Thukral, Nathalie Worp, Bas B. Oude Munnink, Surabhi Rathore +56 more

SPREAD 4: online visualisation of pathogen phylogeographic reconstructions

Virus Evolution(2022)10.1093/ve/veac088

N/A

0.546DataRank · unranked

37 citations

Filip Bielejec, Juan Monetta, Simon Dellicour, Andrew Rambaut, Marc A. Suchard +3 more

Recently reported SARS-CoV-2 genomes suggested to be intermediate between the two early main lineages are instead likely derived

Virus Evolution(2025)10.1093/ve/veaf008

N/A

0.269DataRank · unranked

5 citations

Niema Moshiri, Philippe Lemey, Alexander Crits‐Christoph, Florence Débarre, Stephen A. Goldstein +6 more

Genetic tracing of market wildlife and viruses at the epicenter of the COVID-19 pandemic

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.09.13.557637

N/A

0DataRank · unranked

13 citations

Joshua I. Levy, Jonathan E. Pekar, Stephen A. Goldstein, Reema Singh, Zach Hensel +17 more

Sustained human outbreak of a new MPXV clade I lineage in eastern Democratic Republic of the Congo

Nature Medicine(2024)10.1038/s41591-024-03130-3

N/A

0DataRank · unranked

361 citations

Cris Kacita, Eddy Kinganda-Lusamaki, Áine O’Toole, Tony Wawina-Bokalanga, Daniel Mukadi‐Bamuleka +40 more

Genetic tracing of market wildlife and viruses at the epicenter of the COVID-19 pandemic

Cell(2024)10.1016/j.cell.2024.08.010

N/A

0DataRank · unranked

89 citations

Joshua I. Levy, Jonathan E. Pekar, Stephen A. Goldstein, Reema Singh, Zach Hensel +18 more

An updated framework for SARS-CoV-2 variants reflects the unpredictability of viral evolution

Nature Medicine(2024)10.1038/s41591-024-02949-0

N/A

0DataRank · unranked

27 citations

James R. Otieno, Nathalie Worp, Homa Attar Cohen, Bas B. Oude Munnink, Laith J. Abu‐Raddad +53 more

Integrating dynamical modeling and phylogeographic inference to characterize global influenza circulation

PNAS Nexus(2024)10.1093/pnasnexus/pgae561

N/A

0DataRank · unranked

4 citations

Emanuele Gustani‐Buss, Trevor Bedford, Marc A. Suchard, Nídia S. Trovão, Andrew Rambaut +4 more

Intra- and inter-subtype HIV diversity between 1994 and 2018 in southern Uganda: a longitudinal population-based study

Virus Evolution(2024)10.1093/ve/veae065

N/A

0DataRank · unranked

4 citations

Godfrey Kigozi, Michael A. Martin, Ronald M. Galiwango, Thomas C. Quinn, Andrew D. Redd +14 more

Emergence of the B.1.214.2 SARS-CoV-2 lineage with an Omicron-like spike insertion and a unique upper airway immune signature

BMC Infectious Diseases(2024)10.1186/s12879-024-09967-w

N/A

0DataRank · unranked

2 citations

Johan Van Weyenbergh, Samuel L. Hong, Lize Cuypers, Áine O’Toole, Gytis Dudas +37 more

First imported Cases of MPXV Clade Ib in Goma, Democratic Republic of the Congo: Implications for Global Surveillance and Transmission Dynamics

medRxiv(2024)10.1101/2024.09.12.24313188

N/A

0DataRank · unranked

20 citations

Eddy Kinganda-Lusamaki, Noëlla Mulopo-Mukanya, Adrienne Amuri-Aziza, Áine O’Toole, Brigitte Modadra-Madakpa +48 more

Increasing intra- and inter-subtype HIV diversity despite declining HIV incidence in Uganda

medRxiv(2024)10.1101/2024.03.14.24303990

N/A

0DataRank · unranked

2 citations

Godfrey Kigozi, Michael A. Martin, Ronald M. Galiwango, Thomas C. Quinn, Andrew D. Redd +14 more

The recency and geographical origins of the bat viruses ancestral to SARS-CoV and SARS-CoV-2

Cell(2025)10.1016/j.cell.2025.03.035

N/A

0DataRank · unranked

24 citations

Spyros Lytras, Mahan Ghafari, Andrew F. Magee, Edyth Parker, Yu Wang +14 more

Epidemiology and phylogenomic characterisation of two distinct mpox outbreaks in Kinshasa, DR Congo, involving a new subclade Ia lineage: a retrospective, observational study

The Lancet(2025)10.1016/s0140-6736(25)00294-6

N/A

0DataRank · unranked

22 citations

Sydney Merritt, Eddy Kinganda-Lusamaki, Daan Jansen, Megan Halbrook, Áine O’Toole +38 more

HIPSTR: highest independent posterior subtree reconstruction in TreeAnnotator X

Bioinformatics(2025)10.1093/bioinformatics/btaf488

N/A

0DataRank · unranked

14 citations

Luiz Max Carvalho, Marius Brusselmans, Gytis Dudas, Xiang Ji, John T. McCrone +4 more

Clade Ia Monkeypox Virus Linked to Sexual Transmission, Democratic Republic of the Congo, August 2024

Emerging infectious diseases(2025)10.3201/eid3105.241690

N/A

0DataRank · unranked

4 citations

Kelly-Michel Kenye, Lygie Lunyanga, Daan Jansen, Eddy Kinganda-Lusamaki, Sifa Kavira +41 more

First imported cases of MPXV Clade Ib from Goma, Democratic Republic of the Congo

Communications Medicine(2025)10.1038/s43856-025-01203-z

N/A

0DataRank · unranked

4 citations

Eddy Kinganda-Lusamaki, Noëlla Mulopo-Mukanya, Adrienne Amuri-Aziza, Áine O’Toole, Sydney Merritt +48 more

Evidence of latency reshapes our understanding of Ebola virus reservoir dynamics

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.10.17.683141

N/A

0DataRank · unranked

3 citations

Guy Baele, Ifeanyi F. Omah, Eddy Kinganda-Lusamaki, Joseph A. Brew, Luiz Max Carvalho +6 more

Author response: The age and sex dynamics of heterosexual HIV transmission in Zambia: an HPTN 071 (PopART) phylogenetic and modelling study

(2025)10.7554/elife.107082.1.sa0

N/A

0DataRank · unranked

0 citations

William J. M. Probert, Lucie Abeler‐Dörner, Chris Wymant, Francesco Di Lauro, Xiayoue Xi +21 more

The emergence of SARS-CoV-2 in Europe and North America

Science(2020)10.1126/science.abc8169

N/A

0DataRank · unranked

429 citations

Jonathan E. Pekar, Brendan B. Larsen, Martha I. Nelson, Verity Hill, Jeffrey B. Joy +5 more

Rapid SARS-CoV-2 whole-genome sequencing and analysis for informed public health decision-making in the Netherlands

Nature Medicine(2020)10.1038/s41591-020-0997-y

N/A

0DataRank · unranked

355 citations

David F. Nieuwenhuijse, Mart L. Stein, Áine O’Toole, Manon Haverkate, Madelief Mollers +82 more

Determinants of dengue virus dispersal in the Americas

Virus Evolution(2020)10.1093/ve/veaa074

N/A

0DataRank · unranked

12 citations

Nikita Sahadeo, Philippe Lemey, Albert J. Auguste, Marc A. Suchard, Andrew Rambaut +2 more

Massive Parallelization Boosts Big Bayesian Multidimensional Scaling

Journal of Computational and Graphical Statistics(2020)10.1080/10618600.2020.1754226

N/A

0DataRank · unranked

2 citations

Philippe Lemey, Guy Baele, Simon Dellicour, Dirk Brockmann, Andrew Rambaut +2 more

Online Bayesian Phylodynamic Inference in BEAST with Application to Epidemic Reconstruction

Molecular Biology and Evolution(2020)10.1093/molbev/msaa047

N/A

0DataRank · unranked

1 citations

Philippe Lemey, Marc A. Suchard, Andrew Rambaut, Guy Baele, Mandev S. Gill

The origins of SARS-CoV-2: A critical review

Cell(2021)10.1016/j.cell.2021.08.017

N/A

0DataRank · unranked

513 citations

Stephen A. Goldstein, Angela L. Rasmussen, David L. Robertson, Alexander Crits‐Christoph, Joel O. Wertheim +16 more

Ebola Virus Transmission Initiated by Relapse of Systemic Ebola Virus Disease

New England Journal of Medicine(2021)10.1056/nejmoa2024670

N/A

0DataRank · unranked

105 citations

Catherine Pratt, Mbusa Mutafali-Ruffin, Matthias Pauthner, Faustin N. Bile, Antoine Nkuba-Ndaye +45 more

Relax, Keep Walking — A Practical Guide to Continuous Phylogeographic Inference with BEAST

Molecular Biology and Evolution(2021)10.1093/molbev/msab031

N/A

0DataRank · unranked

69 citations

Mandev S. Gill, Nuno R. Faria, Andrew Rambaut, Oliver Pybus, Marc A. Suchard +2 more

Genomics and epidemiology of a novel SARS-CoV-2 lineage in Manaus, Brazil

medRxiv(2021)10.1101/2021.02.26.21252554

N/A

0DataRank · unranked

206 citations

Thomas A. Mellan, Charles Whittaker, Ingra Morales Claro, Darlan da Silva Cândido, Swapnil Mishra +65 more

Context-specific emergence and growth of the SARS-CoV-2 Delta variant

medRxiv(2021)10.1101/2021.12.14.21267606

N/A

0DataRank · unranked

17 citations

Verity Hill, Sumali Bajaj, Rosario Evans Pena, Ben Lambert, Rhys Inward +35 more

Context-specific emergence and growth of the SARS-CoV-2 Delta variant

Research Square(2021)10.21203/rs.3.rs-1159614/v1

N/A

0DataRank · unranked

5 citations

John T. McCrone, Verity Hill, Sumali Bajaj, Rosario Evans-Pena, Ben Lambert +35 more

Rapid epidemic expansion of the SARS-CoV-2 Omicron variant in southern Africa

Nature(2022)10.1038/s41586-022-04411-y

N/A

0DataRank · unranked

1910 citations

Sikhulile Moyo, Daniel G. Amoako, Houriiyah Tegally, Cathrine Scheepers, Christian L. Althaus +94 more

The molecular epidemiology of multiple zoonotic origins of SARS-CoV-2

Science(2022)10.1126/science.abp8337

N/A

0DataRank · unranked

251 citations

Andrew F. Magee, Edyth Parker, Niema Moshiri, Katherine Izhikevich, Jennifer L. Havens +24 more

Context-specific emergence and growth of the SARS-CoV-2 Delta variant

Nature(2022)10.1038/s41586-022-05200-3

N/A

0DataRank · unranked

143 citations

Verity Hill, Sumali Bajaj, Rosario Evans Pena, Ben Lambert, Rhys Inward +35 more

Rapid epidemic expansion of the SARS-CoV-2 Omicron variant in southern Africa

Nature(2022)10.1038/d41586-021-03832-5

N/A

0DataRank · unranked

73 citations

Sikhulile Moyo, Daniel G. Amoako, Houriiyah Tegally, Cathrine Scheepers, Christian L. Althaus +94 more

APOBEC3 deaminase editing in mpox virus as evidence for sustained human transmission since at least 2016

Science(2023)10.1126/science.adg8116

N/A

0DataRank · unranked

204 citations

Richard A. Neher, Nnaemeka Ndodo, Vítor Borges, Ben Gannon, João Paulo Gomes +16 more

Limited emergence of resistance to integrase strand transfer inhibitors (INSTIs) in ART-experienced participants failing dolutegravir-based antiretroviral therapy: a cross-sectional analysis of a Northeast Nigerian cohort

Journal of Antimicrobial Chemotherapy(2023)10.1093/jac/dkad195

N/A

0DataRank · unranked

26 citations

Ibrahim Musa Kida, Umar Abdullahi Maina, Amina Husaini Ibrahim, James Mshelia, Haruna Wisso +47 more

Demographics of sources of HIV-1 transmission in Zambia: a molecular epidemiology analysis in the HPTN 071 PopART study

The Lancet Microbe(2023)10.1016/s2666-5247(23)00220-3

N/A

0DataRank · unranked

15 citations

Tanya Golubchik, David Bonsall, Lucie Abeler‐Dörner, Mohammed Limbada, Barry Kosloff +81 more

Andrew Rambaut

Indexed papers

Top data-sharing exemplar

Papers