Joseph W. Schafer

Biochemistry, Genetics and Molecular BiologyMaterials ScienceComputer Science

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 10 papers. Top paper: “Large-scale predictions of alternative protein conformations by AlphaFold2-based sequence association”.

Large-scale predictions of alternative protein conformations by AlphaFold2-based sequence association

Nature Communications(2025)10.1038/s41467-025-60759-5

N/A

0.715DataRank · unranked

25 citations

Joseph W. Schafer, Jeshuwin Prabakaran, Devlina Chakravarty, Madeleine F Clore, Lauren L. Porter +1 more

AlphaFold2 has more to learn about protein energy landscapes

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.12.12.571380

N/A

0.489DataRank · unranked

25 citations

Joseph W. Schafer, Ethan A. Chen, Joseph R. Thole, Lauren L. Porter, Devlina Chakravarty

Sequence clustering confounds AlphaFold2

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.01.05.574434

N/A

0.396DataRank · unranked

13 citations

Devlina Chakravarty, Ethan A. Chen, Lauren L. Porter, Joseph W. Schafer

Evolving concepts of the protein universe

iScience(2025)10.1016/j.isci.2025.112012

N/A

0.396DataRank · unranked

13 citations

Lauren Porter, Tsui‐Fen Chou, Shasha Chong, Fabrizio Chiti, Joseph W. Schafer +10 more

AlphaFold2’s training set powers its predictions of fold-switched conformations

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.10.11.617857

N/A

0.269DataRank · unranked

5 citations

Lauren L. Porter, Joseph W. Schafer

AlphaFold predictions of fold-switched conformations are driven by structure memorization

Nature Communications(2024)10.1038/s41467-024-51801-z

N/A

0DataRank · unranked

147 citations

Joseph W. Schafer, Ethan A. Chen, Joseph F. Thole, Leslie A. Ronish, Myeongsang Lee +2 more

Distinguishing features of fold‐switching proteins

Protein Science(2023)10.1002/pro.4596

N/A

0DataRank · unranked

22 citations

Joseph W. Schafer, Lauren L. Porter, Devlina Chakravarty

ColabFold predicts alternative protein structures from single sequences, coevolution unnecessary for AF-cluster

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.11.21.567977

N/A

0DataRank · unranked

19 citations

Devlina Chakravarty, Joseph W. Schafer, Ethan A. Chen, Lauren L. Porter

Evolutionary selection of proteins with two folds

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.01.18.524637

N/A

0DataRank · unranked

2 citations

Lauren L. Porter, Joseph W. Schafer

Evolutionary selection of proteins with two folds

Nature Communications(2023)10.1038/s41467-023-41237-2

N/A

0DataRank · unranked

46 citations

Lauren L. Porter, Joseph W. Schafer