🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Karthik Shekhar

Lawrence Berkeley National Laboratory

ORCID: 0000-0003-4349-6600

Also affiliated with University of California, Berkeley

Biochemistry, Genetics and Molecular BiologyNeuroscienceImmunology and Microbiology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile
9.3Author DataRank

Indexed papers

7in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology
Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 7 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Top data-sharing exemplar

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Cell Atlas of The Human Fovea and Peripheral Retina

Scientific Reports(2020)10.1038/s41598-020-66092-9
Top 5%
4.2DataRank
Top 5%298 citations

Yi-Rong Peng, Tavé van Zyl, Prisca Liberali, Karthik Shekhar, Dejan Juric +3 more

Papers

Driven by 33 papers — median percentile 68. Top paper: “Dietary suppression of MHC class II expression in intestinal epithelial cells enhances intestinal tumorigenesis”.

Dietary suppression of MHC class II expression in intestinal epithelial cells enhances intestinal tumorigenesis

Cell Stem Cell(2021)10.1016/j.stem.2021.08.007
N/A
4.3DataRank · unranked
142 citations

Charlie Chung, Haiwei Mou, Khristian E. Bauer-Rowe, Michael E. Xifaras, Ilgin Ergin +33 more

Cell Atlas of The Human Fovea and Peripheral Retina

Scientific Reports(2020)10.1038/s41598-020-66092-9
Top 5%
4.2DataRank
Top 5%298 citations

Yi-Rong Peng, Tavé van Zyl, Prisca Liberali, Karthik Shekhar, Dejan Juric +3 more

Evolution of neuronal cell classes and types in the vertebrate retina

Nature(2023)10.1038/s41586-023-06638-9
Top 8%
2.9DataRank
Top 8%208 citations

Aboozar Monavarfeshani, Mu Qiao, Allison Kao, Yvonne Kölsch, Ayush Kumar +14 more

Diversification of multipotential postmitotic mouse retinal ganglion cell precursors into discrete types

eLife(2022)10.7554/elife.73809
N/A
1.7DataRank · unranked
69 citations

Irene E Whitney, Salwan Butrus, Yi-Rong Peng, Joshua R. Sanes, Karthik Shekhar

Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets

Cell(2015)10.1016/j.cell.2015.05.002
N/A
1.3DataRank · unranked
7753 citations

Anindita Basu, Rahul Satija, Taras K. Oleksyk, Karthik Shekhar, Melissa Goldman +12 more

Single-cell RNA-seq reveals new types of human blood dendritic cells, monocytes, and progenitors

Science(2017)10.1126/science.aah4573
N/A
1.2DataRank · unranked
2459 citations

Rahul Satija, Gary Reynolds, Siranush Sarkizova, Karthik Shekhar, James Fletcher +19 more

A single-cell survey of the small intestinal epithelium

Nature(2017)10.1038/nature24489
N/A
1.1DataRank · unranked
1850 citations

Moshe Biton, Noga Rogel, Rebecca H. Herbst, Karthik Shekhar, Indresh Singh +18 more

Molecular, spatial, and functional single-cell profiling of the hypothalamic preoptic region

Science(2018)10.1126/science.aau5324
N/A
1.1DataRank · unranked
1485 citations

Dhananjay Bambah-Mukku, Stephen W. Eichhorn, Eric Vaughn, Karthik Shekhar, Julio D. Perez +6 more

Massively parallel single-nucleus RNA-seq with DroNc-seq

Nature Methods(2017)10.1038/nmeth.4407
N/A
1.1DataRank · unranked
1179 citations

Anindita Basu, Tyler Burks, Karthik Shekhar, Matan Hofree, François Aguet +9 more

Single-cell reconstruction of developmental trajectories during zebrafish embryogenesis

Science(2018)10.1126/science.aar3131
N/A
1.0DataRank · unranked
940 citations

Yiqun Wang, Samantha J. Riesenfeld, Karthik Shekhar, Prisca Liberali, Alexander F. Schier +1 more

Cell atlas of aqueous humor outflow pathways in eyes of humans and four model species provides insight into glaucoma pathogenesis

Proceedings of the National Academy of Sciences(2020)10.1073/pnas.2001250117
N/A
0.840DataRank · unranked
269 citations

Wenjun Yan, Alexi McAdams, Yi-Rong Peng, Karthik Shekhar, Prisca Liberali +4 more

Cell Atlas of the Human Fovea and Peripheral Retina

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.02.11.943779
Top 28%
0.711DataRank
Top 28%15 citations

Yi-Rong Peng, Tavé van Zyl, Prisca Liberali, Karthik Shekhar, Dejan Juric +3 more

Temporal single-cell atlas of non-neuronal retinal cells reveals dynamic, coordinated multicellular responses to central nervous system injury

Nature Immunology(2023)10.1038/s41590-023-01437-w
N/A
0.626DataRank · unranked
64 citations

Jiarui Ding, Wenjun Yan, Irene E. Whitney, Anne Jacobi, Malika Sud +8 more

Integrated multi-omics single cell atlas of the human retina

Research Square(2023)10.21203/rs.3.rs-3471275/v1
Top 32%
0.619DataRank
Top 32%19 citations

Jin Li, Jun Wang, Ignacio Ibarra, Xuesen Cheng, Malte D. Luecken +19 more

T helper cells modulate intestinal stem cell renewal and differentiation

bioRxiv (Cold Spring Harbor Laboratory)(2017)10.1101/217133
N/A
0.368DataRank · unranked
5 citations

Adam L. Haber, Semir Beyaz, Noga Rogel, Indresh Singh, Karthik Shekhar +26 more

Altered proportions of retinal cell types and distinct visual codes in rodents occupying divergent ecological niches

Current Biology(2025)10.1016/j.cub.2025.02.014
N/A
0.312DataRank · unranked
7 citations

Joshua Hahn, Rose Richardson, Andreea Pantiru, Joshua W. Mouland, Aadhithyan Babu +13 more

Temporal single cell atlas of non-neuronal retinal cells reveals dynamic, coordinated multicellular responses to central nervous system injury

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.07.10.499469
Top 54%
0.307DataRank
Top 54%4 citations

Jiarui Ding, Wenjun Yan, Irene E. Whitney, Anne Jacobi, Malika Sud +8 more

Molecular states underlying neuronal cell type development and plasticity in the postnatal whisker cortex

PLoS Biology(2025)10.1371/journal.pbio.3003176
Top 55%
0.297DataRank
Top 55%6 citations

Hannah R. Monday, Christopher J. Yoo, Daniel E. Feldman, Karthik Shekhar, Salwan Butrus

Molecular states underlying neuronal cell type development and plasticity in the whisker cortex

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.10.07.617106
Top 60%
0.249DataRank
Top 60%3 citations

Hannah R. Monday, Christopher J. Yoo, Daniel E. Feldman, Karthik Shekhar, Salwan Butrus

Cell Atlas of Aqueous Humor Outflow Pathways in Eyes of Humans and Four Model Species Provides Insights into Glaucoma Pathogenesis

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.02.04.933911
N/A
0.178DataRank · unranked
2 citations

Wenjun Yan, Alexi McAdams, Yi-Rong Peng, Karthik Shekhar, Prisca Liberali +4 more

Ancient origin of the rod bipolar cell pathway in the vertebrate retina

Research Square(2023)10.21203/rs.3.rs-3411693/v1
N/A
0.165DataRank · unranked
2 citations

Ayana Hellevik1, Philip Mardoum, Joshua Hahn, Yvonne Kölsch, Florence D’Orazi1 +10 more

Cholinergic Waves Have a Modest Influence on the Transcriptome of Retinal Ganglion Cells

Journal of Neuroscience(2025)10.1523/jneurosci.0165-25.2025
N/A
0DataRank · unranked
0 citations

Matthew A. Po, Marla B. Feller, Karthik Shekhar, Rachana Deven Somaiya

DroNc-seq step-by-step v1

(2017)10.17504/protocols.io.md2c28e
N/A
0DataRank · unranked
0 citations

Naomi Habib, Prisca Liberali, Feng Zhang, Karthik Shekhar, Matan Hofree +10 more

Molecular classification of zebrafish retinal ganglion cells links genes to cell types to behavior

Neuron(2020)10.1016/j.neuron.2020.12.003
N/A
0DataRank · unranked
112 citations

Joshua Hahn, Anna Sappington, Manuel Stemmer, António M. Fernandes, Thomas O. Helmbrecht +8 more

Generating and Using Transcriptomically Based Retinal Cell Atlases

Annual Review of Vision Science(2021)10.1146/annurev-vision-032621-075200
N/A
0DataRank · unranked
61 citations

Joshua R. Sanes, Karthik Shekhar

Vision-dependent specification of cell types and function in the developing cortex

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.08.10.455824
N/A
0DataRank · unranked
11 citations

Salwan Butrus, Liming Tan, Vincent Xu, Srikant Sagireddy, Joshua T. Trachtenberg +3 more

Vision-Dependent and -Independent Molecular Maturation of Mouse Retinal Ganglion Cells

Neuroscience(2022)10.1016/j.neuroscience.2022.07.013
N/A
0DataRank · unranked
28 citations

Salwan Butrus, Michael A. Dyer, Fred Rieke, Joshua R. Sanes, Karthik Shekhar +1 more

Ancient origin of the rod bipolar cell pathway in the vertebrate retina

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.09.12.557433
N/A
0DataRank · unranked
17 citations

Philip Mardoum, Joshua Hahn, Yvonne Kölsch, Florence D. D’Orazi, Sachihiro C. Suzuki +10 more

Spatial profiling of the interplay between cell type- and vision-dependent transcriptomic programs in the visual cortex

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.12.18.572244
N/A
0DataRank · unranked
6 citations

Saumya Jain, Runzhe Xu, Salwan Butrus, Zhiqun Tan, Xiangmin Xu +3 more

Reconfiguration of the visual code and retinal cell type complement in closely related diurnal and nocturnal mice

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.06.14.598659
N/A
0DataRank · unranked
0 citations

Joshua Hahn, Rose Richardson, Andreea Pantiru, Joshua W. Mouland, Beatriz Baño‐Otálora +12 more

Comparative transcriptomic insights into the evolution of vertebrate photoreceptor types

Current Biology(2025)10.1016/j.cub.2025.03.060
N/A
0DataRank · unranked
15 citations

Takeshi Yoshimatsu, Teresa Puthussery, Tom Baden, Karthik Shekhar, Dario Tommasini

Spatial profiling of the interplay between cell type- and vision-dependent transcriptomic programs in the visual cortex

Proceedings of the National Academy of Sciences(2025)10.1073/pnas.2421022122
N/A
0DataRank · unranked
9 citations

Saumya Jain, Runzhe Xu, Salwan Butrus, Zhiqun Tan, Xiangmin Xu +3 more

Establishing a continuum of cell types in the visual cortex

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.09.22.677893
N/A
0DataRank · unranked
2 citations

Fangming Xie, Salwan Butrus, Runzhe Xu, Zhiqun Tan, Ryan Gorzek +13 more