Deyou Zheng

Biochemistry, Genetics and Molecular BiologyMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 66 papers. Top paper: “Phase separation drives aberrant chromatin looping and cancer development”.

Phase separation drives aberrant chromatin looping and cancer development

Nature(2021)10.1038/s41586-021-03662-5

N/A

0.924DataRank · unranked

471 citations

Eric S. Davis, Timothy A. Daugird, Shuai Zhao, Ivana Yoseli Quiroga, Hidetaka Uryu +14 more

Protective effects of macrophage-specific integrin α5 in myocardial infarction are associated with accentuated angiogenesis

Nature Communications(2023)10.1038/s41467-023-43369-x

N/A

0.910DataRank · unranked

33 citations

Bijun Chen, Akihiko Kubota, Anis Hanna, Claudio Humeres, Silvia C. Hernández +12 more

Fine-tuning spatial-temporal dynamics and surface receptor expression support plasma cell-intrinsic longevity

eLife(2023)10.7554/elife.89712

N/A

0.756DataRank · unranked

19 citations

Phillip M. Galbo, Luis Ovando, Megan Demouth, Skylar Welte, Rosa Park +6 more

A SOX17-PDGFB signaling axis regulates aortic root development

Nature Communications(2022)10.1038/s41467-022-31815-1

N/A

0.406DataRank · unranked

14 citations

Ping Wang, Bingruo Wu, Yidong Wang, Yang Liu, Wei Cheng +13 more

KDM5-mediated transcriptional activation of ribosomal protein genes alters translation efficiency to regulate mitochondrial metabolism in neurons

Nucleic Acids Research(2024)10.1093/nar/gkae261

N/A

0.332DataRank · unranked

6 citations

Hayden A. M. Hatch, Erika Pedrosa, Bethany K Terry, Aubrey A Siebels, Xiang Yu Zheng +8 more

VISTA Emerges as a Promising Target against Immune Evasion Mechanisms in Medulloblastoma

Cancers(2024)10.3390/cancers16152629

N/A

0.312DataRank · unranked

7 citations

Juliana M. Pensabene, Phillip M. Galbo, Negar Sadeghipour, Joanne Xiu, Kirsten Moziak +12 more

The sotos syndrome gene Nsd1 safeguards developmental gene enhancers poised for transcription by maintaining the precise deposition of histone methylation

Journal of Biological Chemistry(2025)10.1016/j.jbc.2025.108423

N/A

0.176DataRank · unranked

2 citations

Zhucui Li, Jiekai Yin, Yinsheng Wang, Deyou Zheng, Ling Cai +2 more

scDAPP: a comprehensive single-cell transcriptomics analysis pipeline optimized for cross-group comparison

NAR Genomics and Bioinformatics(2024)10.1093/nargab/lqae134

N/A

0.173DataRank · unranked

2 citations

Xiang Yu Zheng, Kevyn Jackson, Bang H. Hoang, Bernice E. Morrow, Deyou Zheng +1 more

Bardet-Biedl syndrome proteins regulate intracellular signaling and neuronal function in patient-specific iPSC-derived neurons

Journal of Clinical Investigation(2021)10.1172/jci146287

N/A

0DataRank · unranked

57 citations

Yang Liu, George Stratigopoulos, Sunil K. Panigrahi, Lina Sui, Yiying Zhang +14 more

Single cell multi-omic analysis identifies a Tbx1-dependent multilineage primed population in murine cardiopharyngeal mesoderm

Nature Communications(2021)10.1038/s41467-021-26966-6

N/A

0DataRank · unranked

57 citations

Yang Liu, Christopher De Bono, Dario Righelli, Andrea Cirino, Wei Wang +12 more

Cistrome analysis of YY1 uncovers a regulatory axis of YY1:BRD2/4-PFKP during tumorigenesis of advanced prostate cancer

Nucleic Acids Research(2021)10.1093/nar/gkab252

N/A

0DataRank · unranked

53 citations

Yi‐Hsuan Tsai, Phillip M. Galbo, Weida Gong, Aaron J. Storey, Yuemei Xu +13 more

ZMYND11-MBTD1 induces leukemogenesis through hijacking NuA4/TIP60 acetyltransferase complex and a PWWP-mediated chromatin association mechanism

Nature Communications(2021)10.1038/s41467-021-21357-3

N/A

0DataRank · unranked

42 citations

Phillip M. Galbo, Weida Gong, Aaron J. Storey, Yi‐Hsuan Tsai, Xufen Yu +13 more

Perinatal angiogenesis from pre-existing coronary vessels via DLL4–NOTCH1 signalling

Nature Cell Biology(2021)10.1038/s41556-021-00747-1

N/A

0DataRank · unranked

38 citations

Yidong Wang, Yang Liu, Yifeng Wang, Bingruo Wu, Deyou Zheng +3 more

Multi-omics analysis to identify susceptibility genes for colorectal cancer

Human Molecular Genetics(2021)10.1093/hmg/ddab021

N/A

0DataRank · unranked

29 citations

Jiandong Bao, Zhishan Chen, Anna Díez Villanueva, Wanqing Wen, Fangqin Wang +11 more

Transcription factor MEF2D is required for the maintenance of MLL-rearranged acute myeloid leukemia

Blood Advances(2021)10.1182/bloodadvances.2021004469

N/A

0DataRank · unranked

22 citations

Pengcheng Zhang, Phillip M. Galbo, Xinyue Zhou, Sajesan Aryal, Shaowei Qiu +7 more

UV-induced reduction in Polycomb repression promotes epidermal pigmentation

Developmental Cell(2021)10.1016/j.devcel.2021.08.006

N/A

0DataRank · unranked

21 citations

Pooja Flora, Hong Pu, Carmit Bar, José Silva, Idan Cohen +9 more

Polycomb repressive complex 2 in adult hair follicle stem cells is dispensable for hair regeneration

PLoS Genetics(2021)10.1371/journal.pgen.1009948

N/A

0DataRank · unranked

9 citations

Meng-Yen Li, Phillip M. Galbo, Maider Astorkia, Deyou Zheng, Elena Ezhkova +1 more

Polycomb complexes redundantly maintain epidermal stem cell identity during development

Genes & Development(2021)10.1101/gad.345363.120

N/A

0DataRank · unranked

40 citations

Carmit Bar, Hequn Liu, Víctor Julián Valdés, Dejian Zhao, Phillip M. Galbo +5 more

Identification of ultra-rare genetic variants in Pediatric Acute Onset Neuropsychiatric Syndrome (PANS) by exome and whole genome sequencing

medRxiv(2021)10.1101/2021.05.25.21257256

N/A

0DataRank · unranked

3 citations

Herbert M. Lachman, Olivia R. Manusama, Deyou Zheng, Alberto Spalice, Pietro Chiurazzi +6 more

The DNA dioxygenase Tet1 regulates H3K27 modification and embryonic stem cell biology independent of its catalytic activity

Nucleic Acids Research(2022)10.1093/nar/gkac089

N/A

0DataRank · unranked

67 citations

Qin Tang, Joun Lee, Samuel J. Taylor, Yilin Zhao, Ulrich Steidl +3 more

Blockade of the immunosuppressive KIR2DL5/PVR pathway elicits potent human NK cell–mediated antitumor immunity

Journal of Clinical Investigation(2022)10.1172/jci163620

N/A

0DataRank · unranked

54 citations

Mou Peng, Xing Peng, Wei Yao, Phillip M. Galbo, Devin T. Corrigan +10 more

The immune checkpoint B7x expands tumor-infiltrating Tregs and promotes resistance to anti-CTLA-4 therapy

Nature Communications(2022)10.1038/s41467-022-30143-8

N/A

0DataRank · unranked

43 citations

Marc C. Pulanco, Phillip M. Galbo, Wei Yao, Kim C. Ohaegbulam, Deyou Zheng +2 more

Identification of ultra-rare genetic variants in pediatric acute onset neuropsychiatric syndrome (PANS) by exome and whole genome sequencing

Scientific Reports(2022)10.1038/s41598-022-15279-3

N/A

0DataRank · unranked

37 citations

Herbert M. Lachman, Olivia R. Manusama, Deyou Zheng, Alberto Spalice, Pietro Chiurazzi +7 more

PRC2-Inactivating Mutations in Cancer Enhance Cytotoxic Response to DNMT1-Targeted Therapy via Enhanced Viral Mimicry

Cancer Discovery(2022)10.1158/2159-8290.cd-21-1671

N/A

0DataRank · unranked

33 citations

Sarah Warda, Jesper L.V. Mååg, Rohan Misra, Miguel A. Miranda-Román, Mohini R. Pachai +22 more

Tumor-intrinsic PRC2 inactivation drives a context-dependent immune-desert microenvironment and is sensitized by immunogenic viruses

Journal of Clinical Investigation(2022)10.1172/jci153437

N/A

0DataRank · unranked

26 citations

Yuedan Chen, Amish J. Patel, Sarah Warda, Cindy J. Lee, Briana G. Nixon +21 more

The immune checkpoint B7-H3 (CD276) regulates adipocyte progenitor metabolism and obesity development

Science Advances(2022)10.1126/sciadv.abm7012

N/A

0DataRank · unranked

23 citations

Phillip M. Galbo, Haihong Zong, Meenu Rohini Rajan, Ville Wallenius, Deyou Zheng +5 more

Characterization of cell-cell communication in autistic brains with single-cell transcriptomes

Journal of Neurodevelopmental Disorders(2022)10.1186/s11689-022-09441-1

N/A

0DataRank · unranked

16 citations

Herbert M. Lachman, Deyou Zheng, Maider Astorkia

A glycan-based approach to cell characterization and isolation: Hematopoiesis as a paradigm

The Journal of Experimental Medicine(2022)10.1084/jem.20212552

N/A

0DataRank · unranked

11 citations

Emily Schwenger, Sriram Sundaravel, Catarina M. Stein, Yang Liu, Pamela Stanley +8 more

Functional Contribution of Cancer-Associated Fibroblasts in Glioblastoma

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.04.07.487495

N/A

0DataRank · unranked

7 citations

Yang Liu, Mou Peng, Yao Wei, Anne Tranberg Madsen, Sarah Graff +6 more

Tumor-intrinsic PRC2 inactivation drives a context-dependent immune-desert tumor microenvironment and confers resistance to immunotherapy

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.05.27.493507

N/A

0DataRank · unranked

1 citations

Yuedan Chen, Amish J. Patel, Sarah Warda, Briana G. Nixon, Elissa W.P. Wong +20 more

PRC2 Inactivating Mutations in Cancer are Synthetic Lethal with DNMT1 Targeted Therapy via Enhanced Viral Mimicry

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.05.28.493429

N/A

0DataRank · unranked

0 citations

Sarah Warda, Jesper L.V. Mååg, Rohan Misra, Miguel A. Miranda-Román, Mohini R. Pachai +20 more

HSMotifDiscover: identification of motifs in sequences composed of non-single-letter elements

Bioinformatics(2022)10.1093/bioinformatics/btac437

N/A

0DataRank · unranked

0 citations

Rohan Misra, Steven C. Almo, Ulrich Steidl, Hannes E. Bülow, Deyou Zheng +1 more

Chromatin regulators in the TBX1 network confer risk for conotruncal heart defects in 22q11.2DS and sporadic congenital heart disease

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.09.30.507111

N/A

0DataRank · unranked

0 citations

Yujue Wang, Lijie Shi, Donna M. McDonald‐McGinn, T. Blaine Crowley, Daniel E. McGinn +45 more

An optimized approach for multiplexing single-nuclear ATAC-seq using oligonucleotide conjugated antibodies

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.12.22.521637

N/A

0DataRank · unranked

0 citations

Taylor V. Thompson, Eric Sosa, Hiroko Nomaru, David M. Reynolds, Robert Dubin +6 more

MLL3 loss drives metastasis by promoting a hybrid epithelial–mesenchymal transition state

Nature Cell Biology(2023)10.1038/s41556-022-01045-0

N/A

0DataRank · unranked

77 citations

Chi Zhang, Ji‐Eun Lee, Boris Bartholdy, Dapeng Yang, Yu Liu +8 more

Functional Contribution and Clinical Implication of Cancer-Associated Fibroblasts in Glioblastoma

Clinical Cancer Research(2023)10.1158/1078-0432.ccr-23-0493

N/A

0DataRank · unranked

63 citations

Anne Tranberg Madsen, Yang Liu, Mou Peng, Wei Yao, Michael J. Ciesielski +8 more

Dynamic changes in whole genome DNA methylation, chromatin and gene expression during mouse lens differentiation

Epigenetics & Chromatin(2023)10.1186/s13072-023-00478-7

N/A

0DataRank · unranked

40 citations

Yilin Zhao, Danielle Rayêe, Qing Xie, Masako Suzuki, Deyou Zheng +2 more

Single-cell transcriptomics uncovers a non-autonomous Tbx1-dependent genetic program controlling cardiac neural crest cell development

Nature Communications(2023)10.1038/s41467-023-37015-9

N/A

0DataRank · unranked

39 citations

Yang Liu, Alexander Ferrena, Aneesa Valentine, Deyou Zheng, Bernice E. Morrow +1 more

A SOX9-B7x axis safeguards dedifferentiated tumor cells from immune surveillance to drive breast cancer progression

Developmental Cell(2023)10.1016/j.devcel.2023.10.010

N/A

0DataRank · unranked

29 citations

Peter John, Kenta Nishitani, Jihong Cui, Christopher Nishimura, John R. Christin +16 more

SKP2 Knockout in Rb1/p53–Deficient Mouse Models of Osteosarcoma Induces Immune Infiltration and Drives a Transcriptional Program with a Favorable Prognosis

Molecular Cancer Therapeutics(2023)10.1158/1535-7163.mct-23-0173

N/A

0DataRank · unranked

17 citations

Jichuan Wang, Ranxin Zhang, Burcu Karadal-Ferrena, Waleed Al-Hardan, Swapnil Singh +9 more

Chromatin regulators in the TBX1 network confer risk for conotruncal heart defects in 22q11.2DS

npj Genomic Medicine(2023)10.1038/s41525-023-00363-y

N/A

0DataRank · unranked

12 citations

Yujue Wang, Lijie Shi, Donna M. McDonald‐McGinn, T. Blaine Crowley, Daniel E. McGinn +47 more

An optimized approach for multiplexing single-nuclear ATAC-seq using oligonucleotide-conjugated antibodies

Epigenetics & Chromatin(2023)10.1186/s13072-023-00486-7

N/A

0DataRank · unranked

4 citations

Taylor V. Thompson, Eric Sosa, Hiroko Nomaru, David M. Reynolds, Robert Dubin +6 more

Dgcr8 functions in the secondary heart field for outflow tract and right ventricle development in mammals

Developmental Biology(2023)10.1016/j.ydbio.2023.12.005

N/A

0DataRank · unranked

4 citations

Yang Liu, Lijie Shi, Deyou Zheng, Bernice E. Morrow, Silvia E. Racedo

SKP2 knockout in Rb1/p53 deficient mouse models of osteosarcoma induces immune infiltration and drives a transcriptional program with a favorable prognosis

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.05.09.540053

N/A

0DataRank · unranked

4 citations

Jichuan Wang, Ranxin Zhang, Burcu Karadal-Ferrena, Waleed Al-Hardan, Swapnil Singh +8 more

Molecular and network disruptions in neurodevelopment uncovered by single cell transcriptomics analysis of CHD8 heterozygous cerebral organoids

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.09.27.559752

N/A

0DataRank · unranked

4 citations

Yang Liu, Erika Pedrosa, Herbert M. Lachman, Deyou Zheng, Maider Astorkia

Data from Molecular Features of Cancer-associated Fibroblast Subtypes and their Implication on Cancer Pathogenesis, Prognosis, and Immunotherapy Resistance

(2023)10.1158/1078-0432.c.6531005.v1

N/A

0DataRank · unranked

0 citations

Xingxing Zang, Deyou Zheng, Phillip M. Galbo

Data from Molecular Features of Cancer-associated Fibroblast Subtypes and their Implication on Cancer Pathogenesis, Prognosis, and Immunotherapy Resistance

(2023)10.1158/1078-0432.c.6531005

N/A

0DataRank · unranked

0 citations

Xingxing Zang, Deyou Zheng, Phillip M. Galbo

Six3 and Six6 jointly regulate the identities and developmental trajectories of multipotent retinal progenitor cells in the mouse retina

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.05.03.539288

N/A

0DataRank · unranked

0 citations

Xusheng Zhang, Rupendra Shrestha, Deyou Zheng, Wei Liu, Alexander Ferrena

TMIGD2 is an orchestrator and therapeutic target on human acute myeloid leukemia stem cells

Nature Communications(2024)10.1038/s41467-023-43843-6

N/A

0DataRank · unranked

58 citations

R. Alejandro Sica, Gurbakhash Kaur, Phillip M. Galbo, Zhixin Jing, Christopher Nishimura +8 more

Targeted inhibition of SCFSKP2 confers anti-tumor activities resulting in a survival benefit in osteosarcoma

Oncogene(2024)10.1038/s41388-024-02942-4

N/A

0DataRank · unranked

20 citations

Alexander Ferrena, Ranxin Zhang, Swapnil Singh, Valentina Viscarret, Waleed Al-Harden +15 more

Molecular and network disruptions in neurodevelopment uncovered by single cell transcriptomics analysis of CHD8 heterozygous cerebral organoids

Heliyon(2024)10.1016/j.heliyon.2024.e34862

N/A

0DataRank · unranked

12 citations

Yang Liu, Erika Pedrosa, Herbert M. Lachman, Deyou Zheng, Maider Astorkia

Structure and transcription of integrated HPV DNA in vulvar carcinomas

npj Genomic Medicine(2024)10.1038/s41525-024-00418-8

N/A

0DataRank · unranked

8 citations

Lauren Turker, Yoke‐Chen Chang, Joshua Gould, Bryan Harmon, Elaine C. Maggi +11 more

Fine-tuning spatial-temporal dynamics and surface receptor expression support plasma cell-intrinsic longevity

eLife(2024)10.7554/elife.89712.3

N/A

0DataRank · unranked

4 citations

Phillip M. Galbo, Luis Ovando, Megan Demouth, Skylar Welte, Rosa Park +6 more

Lineage commitment pathways epigenetically oppose oncogenic Gαq/11-YAP1 signaling in dormant disseminated uveal melanoma

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.03.05.583565

N/A

0DataRank · unranked

1 citations

Melisa Lopez Anton, Timothy J. Purwin, Lornella Seeneevassen, Vivian Chua, Francis Waltrich +10 more

scDAPP: a comprehensive single-cell transcriptomics analysis pipeline optimized for cross-group comparison

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.05.06.592708

N/A

0DataRank · unranked

1 citations

Xiang Yu Zheng, Kevyn Jackson, Bang H. Hoang, Bernice E. Morrow, Deyou Zheng +1 more

Facilitate integrated analysis of single cell multiomic data by binarizing gene expression values

Nature Communications(2025)10.1038/s41467-025-60899-8

N/A

0DataRank · unranked

4 citations

Alexander Ferrena, Deyou Zheng, Rohan Misra

shinyUMAP: an online tool for promoting understanding of single cell omics data visualization

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.08.27.672621

N/A

0DataRank · unranked

0 citations

Kevin O’Leary, W Chen, Deyou Zheng, Rohan Misra

NFI transcription factors provide chromatin access to maintain stem cell identity while preventing unintended lineage fate choices

Nature Cell Biology(2020)10.1038/s41556-020-0513-0

N/A

0DataRank · unranked

97 citations

Hanseul Yang, Yejing Ge, Nicole R. Infarinato, Shiri Gur‐Cohen, Yuxuan Miao +12 more

Immune checkpoint B7x promotes immune evasion and resistance to PD-1/PD-L1 blockade in bladder cancer

Genes & Diseases(2025)10.1016/j.gendis.2025.101950

N/A

0DataRank · unranked

0 citations

Xiang Yu Zheng, Alexander Sankin, Deyou Zheng, Xingxing Zang, Marc C. Pulanco

An H3K36 Methylation-Engaging Tudor Motif of Polycomb-like Proteins Mediates PRC2 Complex Targeting

UNC Libraries(2020)10.17615/q67p-3n83

N/A

0DataRank · unranked

9 citations

Dinshaw J. Patel, Bowen Xu, Deyou Zheng, Shira Rockowitz, Brian D. Strahl +8 more

Transcriptome analysis of neural progenitor cells derived from Lowe syndrome induced pluripotent stem cells: identification of candidate genes for the neurodevelopmental and eye manifestations

Journal of Neurodevelopmental Disorders(2020)10.1186/s11689-020-09317-2

N/A

0DataRank · unranked

25 citations

Jesse Barnes, Erika Pedrosa, Nathaniel S. Herman, Franklin Salas, Ping Wang +3 more

Stereo3D: using stereo images to enrich 3D visualization

Bioinformatics(2020)10.1093/bioinformatics/btaa521

N/A

0DataRank · unranked

1 citations

Vinod Kumar Singh, Deyou Zheng, Yang Liu

YY1 cistrome analysis uncovers an essential requirement of the YY1:BRD4-PFKP regulatory axis for promoting tumorigenesis of castration-resistant prostate cancer

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.09.17.302596

N/A

0DataRank · unranked

0 citations

Yi‐Hsuan Tsai, Phillip M. Galbo, Weida Gong, Aaron J. Storey, Yuemei Xu +12 more

Single cell multi-omic analysis identifies a Tbx1 -dependent multilineage primed population in the murine cardiopharyngeal mesoderm

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.12.24.424342

N/A

0DataRank · unranked

0 citations

Yang Liu, Christopher De Bono, Dario Righelli, Andrea Cirino, Wei Wang +10 more

Molecular Features of Cancer-associated Fibroblast Subtypes and their Implication on Cancer Pathogenesis, Prognosis, and Immunotherapy Resistance

Clinical Cancer Research(2021)10.1158/1078-0432.ccr-20-4226

N/A

0DataRank · unranked

425 citations

Xingxing Zang, Deyou Zheng, Phillip M. Galbo

KIR3DL3-HHLA2 is a human immunosuppressive pathway and a therapeutic target

Science Immunology(2021)10.1126/sciimmunol.abf9792

N/A

0DataRank · unranked

89 citations

Xiaoxin Ren, Phillip M. Galbo, Scott Moerdler, Hao Wang, R. Alejandro Sica +11 more