Andrew D. Kern

Yale University

Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

12.9Author DataRank

Indexed papers

1in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 1 indexed paper attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

Nature(2007)10.1038/nature05874

Top 1%

12.9DataRank

Top 1%5277 citations

J Stamatoyannopoulos, Simon G. Gregory, T Gingeras, Eoghan Harrington, Zhiping Weng +286 more

Papers

Driven by 42 papers — median percentile 100. Top paper: “Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project”.

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

Nature(2007)10.1038/nature05874

Top 1%

12.9DataRank

Top 1%5277 citations

J Stamatoyannopoulos, Simon G. Gregory, T Gingeras, Eoghan Harrington, Zhiping Weng +286 more

Visualizing population structure with variational autoencoders

G3 Genes Genomes Genetics(2021)10.1093/g3journal/jkaa036

N/A

2.9DataRank · unranked

84 citations

Gabrielle C. Coffing, Andrew D. Kern, C.J. Battey

A community-maintained standard library of population genetic models

eLife(2020)10.7554/elife.54967

N/A

0.835DataRank · unranked

260 citations

C. B. Cole, Noah Dukler, Jared Galloway, Ariella Gladstein, Graham Gower +24 more

Accessible, Realistic Genome Simulation with Selection Using stdpopsim

Molecular Biology and Evolution(2025)10.1093/molbev/msaf236

N/A

0.312DataRank · unranked

7 citations

Nathaniel S. Pope, Murillo F. Rodrigues, Silas Tittes, Linh N. Tran, Ornob Alam +26 more

Evaluating Human Autosomal Loci for Sexually Antagonistic Viability Selection in Two Large Biobanks

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.03.26.009670

N/A

0.241DataRank · unranked

4 citations

Abin Abraham, Peter L. Ralph, Andrew D. Kern, John A. Capra, Patrick C. Phillips +1 more

Simulation-based spatially explicit close-kin mark-recapture

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.05.31.656892

N/A

0.104DataRank · unranked

1 citations

Claire K. Goodfellow, Nelson Ting, Andrew D. Kern, Peter L. Ralph, Gilia Patterson

Visualizing Population Structure with Variational Autoencoders

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.08.12.248278

N/A

0DataRank · unranked

11 citations

Gabrielle C. Coffing, Andrew D. Kern, C.J. Battey

Parallel Geographic Variation in Drosophila melanogaster

UNC Libraries(2020)10.17615/kva8-yw80

N/A

0DataRank · unranked

5 citations

Reinhardt, Josie A., Andrew D. Kern, Corbin D. Jones, David J Begun, Bryan Kolaczkowski

Efficient ancestry and mutation simulation with msprime 1.0

Genetics(2021)10.1093/genetics/iyab229

N/A

0DataRank · unranked

517 citations

Gertjan Bisschop, Daniel Goldstein, Graham Gower, Aaron P. Ragsdale, Georgia Tsambos +27 more

Population Genomics: Whole-Genome Analysis of Polymorphism and Divergence in Drosophila simulans

UNC Libraries(2021)10.17615/1d8m-k379

N/A

0DataRank · unranked

1 citations

Charles H. Langley, Alisha K. Holloway, Phillip M Nista, LaDeana W. Hillier, Corbin D. Jones +8 more

Efficient ancestry and mutation simulation with msprime 1.0

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.08.31.457499

N/A

0DataRank · unranked

31 citations

Gertjan Bisschop, Daniel Goldstein, Graham Gower, Aaron P. Ragsdale, Georgia Tsambos +27 more

Cell types and molecular architecture of the Octopus bimaculoides visual system

Current Biology(2022)10.1016/j.cub.2022.10.015

N/A

0DataRank · unranked

56 citations

Gabrielle C. Coffing, Denise M. Piscopo, Judit R. Pungor, Andrew D. Kern, Adam C. Miller +2 more

Accurate Detection of Incomplete Lineage Sorting via Supervised Machine Learning

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.11.09.515828

N/A

0DataRank · unranked

13 citations

Andrew D. Kern, Matthew W. Hahn, Benjamin K. Rosenzweig

Dispersal inference from population genetic variation using a convolutional neural network

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.08.25.505329

N/A

0DataRank · unranked

10 citations

Silas Tittes, Peter L. Ralph, Andrew D. Kern, Chris C. R. Smith

Expanding the stdpopsim species catalog, and lessons learned for realistic genome simulations

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.10.29.514266

N/A

0DataRank · unranked

10 citations

Maria Izabel A. Cavassim, Ariella Gladstein, Graham Gower, Nathaniel S. Pope, Georgia Tsambos +37 more

Cell types and molecular architecture of the octopus visual system

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.06.11.495763

N/A

0DataRank · unranked

4 citations

Gabrielle C. Coffing, Denise M. Piscopo, Judit R. Pungor, Andrew D. Kern, Adam C. Miller +2 more

Standing genetic variation and chromosome differences drove rapid ecotype formation in a major malaria mosquito

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.11.21.517335

N/A

0DataRank · unranked

0 citations

Carlo Costantini, N’Falé Sagnon, Wamdaogo M. Guelbéogo, Scott Emrich, Andrew D. Kern +3 more

Expanding the stdpopsim species catalog, and lessons learned for realistic genome simulations

eLife(2023)10.7554/elife.84874

N/A

0DataRank · unranked

55 citations

Maria Izabel A. Cavassim, Ariella Gladstein, Graham Gower, Nathaniel S. Pope, Georgia Tsambos +37 more

Dispersal inference from population genetic variation using a convolutional neural network

Genetics(2023)10.1093/genetics/iyad068

N/A

0DataRank · unranked

53 citations

Silas Tittes, Peter L. Ralph, Andrew D. Kern, Chris C. R. Smith

Standing genetic variation and chromosome differences drove rapid ecotype formation in a major malaria mosquito

Proceedings of the National Academy of Sciences(2023)10.1073/pnas.2219835120

N/A

0DataRank · unranked

22 citations

Carlo Costantini, N’Falé Sagnon, Wamdaogo M. Guelbéogo, Scott Emrich, Andrew D. Kern +3 more

disperseNN2: a neural network for estimating dispersal distance from georeferenced polymorphism data

BMC Bioinformatics(2023)10.1186/s12859-023-05522-7

N/A

0DataRank · unranked

13 citations

Andrew D. Kern, Chris C. R. Smith

Shared evolutionary processes shape landscapes of genomic variation in the great apes

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.02.07.527547

N/A

0DataRank · unranked

6 citations

Andrew D. Kern, Peter L. Ralph, Murillo F. Rodrigues

A Quantitative Genetic Model of Background Selection in Humans

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.09.07.556762

N/A

0DataRank · unranked

3 citations

Andrew D. Kern, Vince Buffalo

Expanding the stdpopsim species catalog, and lessons learned for realistic genome simulations

(2023)10.7554/elife.84874.1

N/A

0DataRank · unranked

2 citations

Maria Izabel A. Cavassim, Ariella Gladstein, Graham Gower, Nathaniel S. Pope, Georgia Tsambos +37 more

disperseNN2 : a neural network for estimating dispersal distance from georeferenced polymorphism data

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.07.30.551115

N/A

0DataRank · unranked

2 citations

Andrew D. Kern, Chris C. R. Smith

Author Response: Expanding the stdpopsim species catalog, and lessons learned for realistic genome simulations

(2023)10.7554/elife.84874.1.sa0

N/A

0DataRank · unranked

0 citations

Maria Izabel A. Cavassim, Ariella Gladstein, Graham Gower, Nathaniel S. Pope, Georgia Tsambos +37 more

Evaluating evidence for co-geography in the Anopheles-Plasmodium host-parasite system

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.07.17.549405

N/A

0DataRank · unranked

0 citations

Peter L. Ralph, Andrew D. Kern, Clara T. Rehmann

Shared evolutionary processes shape landscapes of genomic variation in the great apes

Genetics(2024)10.1093/genetics/iyae006

N/A

0DataRank · unranked

14 citations

Andrew D. Kern, Peter L. Ralph, Murillo F. Rodrigues

Estimation of spatial demographic maps from polymorphism data using a neural network

Molecular Ecology Resources(2024)10.1111/1755-0998.14005

N/A

0DataRank · unranked

5 citations

Gilia Patterson, Peter L. Ralph, Andrew D. Kern, Chris C. R. Smith

Evaluating evidence for co-geography in the Anopheles–Plasmodium host–parasite system

G3 Genes Genomes Genetics(2024)10.1093/g3journal/jkae008

N/A

0DataRank · unranked

3 citations

Peter L. Ralph, Andrew D. Kern, Clara T. Rehmann

Cephalopod Sex Determination and its Ancient Evolutionary Origin

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.02.21.581452

N/A

0DataRank · unranked

4 citations

Silas Tittes, Scott T. Small, Jeremea O. Songco-Casey, Denise M. Piscopo, Judit R. Pungor +4 more

Estimation of spatial demographic maps from polymorphism data using a neural network

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.03.15.585300

N/A

0DataRank · unranked

3 citations

Gilia Patterson, Peter L. Ralph, Andrew D. Kern, Chris C. R. Smith

Cephalopod sex determination and its ancient evolutionary origin

Current Biology(2025)10.1016/j.cub.2025.01.005

N/A

0DataRank · unranked

19 citations

Silas Tittes, Scott T. Small, Jeremea O. Songco-Casey, Denise M. Piscopo, Judit R. Pungor +4 more

Population Genetics Meets Ecology: A Guide to Individual‐Based Simulations in Continuous Landscapes

Ecology and Evolution(2025)10.1002/ece3.71098

N/A

0DataRank · unranked

8 citations

Jiseon Min, Victoria Caudill, Samuel E. Champer, Benjamin C. Haller, Clara T. Rehmann +7 more

Sweeps in Space: Leveraging Geographic Data to Identify Beneficial Alleles in Anopheles gambiae

Molecular Biology and Evolution(2025)10.1093/molbev/msaf141

N/A

0DataRank · unranked

3 citations

Scott T. Small, Peter L. Ralph, Andrew D. Kern, Clara T. Rehmann

A non-invasive method to genotype cephalopod sex by quantitative PCR

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.10.28.685099

N/A

0DataRank · unranked

0 citations

Gabrielle C. Coffing, C. Gibbons, Scott T. Small, Thomas Desvignes, Jeffery Pessutti +7 more

Simulation‐Based Spatially Explicit Close‐Kin Mark–Recapture

Molecular Ecology Resources(2025)10.1111/1755-0998.70074

N/A

0DataRank · unranked

0 citations

Claire K. Goodfellow, Nelson Ting, Andrew D. Kern, Peter L. Ralph, Gilia Patterson

Predicting the Landscape of Recombination Using Deep Learning

Molecular Biology and Evolution(2020)10.1093/molbev/msaa038

N/A

0DataRank · unranked

189 citations

Jared Galloway, Andrew D. Kern, Jeffrey R. Adrion

Predicting geographic location from genetic variation with deep neural networks

eLife(2020)10.7554/elife.54507

N/A

0DataRank · unranked

135 citations

Peter L. Ralph, Andrew D. Kern, C.J. Battey

Discovery of Ongoing Selective Sweeps within Anopheles Mosquito Populations Using Deep Learning

Molecular Biology and Evolution(2020)10.1093/molbev/msaa259

N/A

0DataRank · unranked

55 citations

Daniel R. Schrider, Andrew D. Kern, Alessandra della Torre, Beniamino Caputo, Bilali Kabula +42 more

Evaluating human autosomal loci for sexually antagonistic viability selection in two large biobanks

Genetics(2020)10.1093/genetics/iyaa015

N/A

0DataRank · unranked

38 citations

Abin Abraham, Peter L. Ralph, Andrew D. Kern, John A. Capra, Patrick C. Phillips +1 more

Genome variation and population structure among 1142 mosquitoes of the African malaria vector species Anopheles gambiae and Anopheles coluzzii

Genome Research(2020)10.1101/gr.262790.120

N/A

0DataRank · unranked

173 citations

Chris C.S. Clarkson, Alistair Miles, Nicholas J. Harding, Eric R. Lucas, C.J. Battey +58 more

Andrew D. Kern

Indexed papers

Top data-sharing exemplar

Papers