Juilee Thakar

Also affiliated with University of Rochester

Biochemistry, Genetics and Molecular BiologyMedicineImmunology and Microbiology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 5%percentile

0.401Author DataRank

Indexed papers

1in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 1 indexed paper attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

WikiNetworks: translating manually created biological pathways for topological analysis

Bioinformatics(2021)10.1093/bioinformatics/btab699

Top 46%

0.401DataRank

Top 46%8 citations

Shannon P. Hilchey, Martin S. Zand, Juilee Thakar, Mukta G. Palshikar

Papers

Driven by 29 papers — median percentile 54. Top paper: “Clonal associations between lymphocyte subsets and functional states in rheumatoid arthritis synovium”.

Clonal associations between lymphocyte subsets and functional states in rheumatoid arthritis synovium

Nature Communications(2024)10.1038/s41467-024-49186-0

N/A

1.1DataRank · unranked

56 citations

Aaron B. Wagner, Nida Meednu, Ruoqiao Huiyi Wang, Fan Zhang, Jabea Cyril Ekabe +84 more

Immune digital twins for complex human pathologies: applications, limitations, and challenges

npj Systems Biology and Applications(2024)10.1038/s41540-024-00450-5

N/A

0.652DataRank · unranked

76 citations

Reinhard Laubenbacher, Gary An, Yaron Ilan, Jasmin Fisher, Åsmund Flobak +42 more

Generation and Functional Analysis of Defective Viral Genomes during SARS-CoV-2 Infection

mBio(2023)10.1128/mbio.00250-23

N/A

0.564DataRank · unranked

42 citations

Nora J. Gilliam, Sizhen Li, Simone Spandau, Raven M. Osborn, Sarah E. Connor +8 more

Traditional Farming Lifestyle in Old Older Mennonites Modulates Human Milk Composition

Frontiers in Immunology(2021)10.3389/fimmu.2021.741513

N/A

0.457DataRank · unranked

20 citations

Rakin A. Choudhury, Catherine Pizzarello, Rohith Palli, Sade Fridy, Puja S. Rajani +14 more

Biomarkers of Development of Immunity and Allergic Diseases in Farming and Non-farming Lifestyle Infants: Design, Methods and 1 Year Outcomes in the “Zooming in to Old Order Mennonites” Birth Cohort Study

Frontiers in Pediatrics(2022)10.3389/fped.2022.916184

N/A

0.448DataRank · unranked

16 citations

Erin C. Davis, Erin Bevec, Courtney M. Jackson, Catherine Pizzarello, Elizabeth Catlin +10 more

Homeodomain-interacting protein kinase maintains neuronal homeostasis during normal Caenorhabditis elegans aging and systemically regulates longevity from serotonergic and GABAergic neurons

eLife(2023)10.7554/elife.85792

N/A

0.408DataRank · unranked

12 citations

Adam Cornwell, Carlos A. Díaz-Balzac, Ritika Das, Zachary C. Ward, Nicholas Macoretta +3 more

WikiNetworks: translating manually created biological pathways for topological analysis

Bioinformatics(2021)10.1093/bioinformatics/btab699

Top 46%

0.401DataRank

Top 46%8 citations

Shannon P. Hilchey, Martin S. Zand, Juilee Thakar, Mukta G. Palshikar

Executable models of immune signaling pathways in HIV-associated atherosclerosis

npj Systems Biology and Applications(2022)10.1038/s41540-022-00246-5

N/A

0.345DataRank · unranked

9 citations

Rohith Palli, Alicia Tyrell, Sanjay B. Maggirwar, Giovanni Schifitto, Meera V. Singh +2 more

Cyclosporine A Modulates LSP1 Protein Levels in Human B Cells to Attenuate B Cell Migration at Low O2 Levels

Life(2022)10.3390/life12081284

N/A

0.330DataRank · unranked

8 citations

Mukta G. Palshikar, Eric S Mendelson, Shichen Shen, Sailee Rasam, Jason Emo +4 more

The C. elegans Myc-family of transcription factors coordinate a dynamic adaptive response to dietary restriction

GeroScience(2024)10.1007/s11357-024-01197-x

N/A

0.299DataRank · unranked

4 citations

Renee Zhang, Manjunatha Thondamal, David W. Johnson, Juilee Thakar, Andrew V. Samuelson +1 more

Unbiased analysis of peripheral blood mononuclear cells reveals CD4 T cell response to RSV matrix protein

Vaccine X(2020)10.1016/j.jvacx.2020.100065

N/A

0.241DataRank · unranked

4 citations

Qian Yu, Lauren Benoodt, David Roumanes, Xing Qiu, Nathan Laniewski +12 more

Homeodomain-interacting protein kinase maintains neuronal homeostasis during normal Caenorhabditis elegans aging and systemically regulates longevity from serotonergic and GABAergic neurons

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.01.11.523661

N/A

0DataRank · unranked

0 citations

Adam Cornwell, Carlos A. Díaz-Balzac, Ritika Das, Zachary C. Ward, Nicholas Macoretta +3 more

The C. elegans Myc-family of transcription factors coordinate a dynamic adaptive response to dietary restriction

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.11.22.568222

N/A

0DataRank · unranked

0 citations

Renee Zhang, Manjunatha Thondamal, David W. Johnson, Juilee Thakar, Andrew V. Samuelson +1 more

Comparative analysis of single-cell pathway scoring methods and a novel approach

NAR Genomics and Bioinformatics(2024)10.1093/nargab/lqae124

N/A

0DataRank · unranked

15 citations

Juilee Thakar, Ruoqiao Huiyi Wang

Discrete-state models identify pathway specific B cell states across diseases and infections at single-cell resolution

Journal of Theoretical Biology(2024)10.1016/j.jtbi.2024.111769

N/A

0DataRank · unranked

1 citations

Mukta G. Palshikar, Shannon P. Hilchey, Martin S. Zand, Juilee Thakar, George Kassis

Single-cell analysis of lung epithelial cells reveals age and cell population-specific responses to SARS-CoV-2 infection in ciliated cells

Clinical & Experimental Immunology(2024)10.1093/cei/uxae118

N/A

0DataRank · unranked

0 citations

Christopher Anderson, Justin M. Leach, Chin‐Yi Chu, Stephen Dewhurst, Thomas J. Mariani +2 more

Monocytes defined by platelet interactions and oxidative stress signaling underlie HIV-associated atherosclerosis

Zenodo (CERN European Organization for Nuclear Research)(2025)10.5281/zenodo.18019629

N/A

0DataRank · unranked

0 citations

Zachary D. Boodoo, Meera V. Singh, Juilee Thakar, Ruoqiao Huiyi Wang

Cyclosporine a directly affects human and mouse b cell migration in vitro by disrupting a hIF-1 αdependent, o2 sensing, molecular switch

BMC Immunology(2020)10.1186/s12865-020-0342-8

N/A

0DataRank · unranked

17 citations

Mukta G. Palshikar, Jason Emo, Dongmei Li, Jessica Garigen, Jiong Wang +5 more

Monocytes defined by platelet interactions and oxidative stress signaling underlie HIV-associated atherosclerosis

Zenodo (CERN European Organization for Nuclear Research)(2025)10.5281/zenodo.18019630

N/A

0DataRank · unranked

0 citations

Zachary D. Boodoo, Meera V. Singh, Juilee Thakar, Ruoqiao Huiyi Wang

Impact of vaccine type on HIV-1 vaccine elicited antibody durability and B cell gene signature

Scientific Reports(2020)10.1038/s41598-020-69007-w

N/A

0DataRank · unranked

10 citations

Kelly E. Seaton, Michael S. Piepenbrink, John Hural, Paul Goepfert, Fatima Laher +11 more

SysMod: the ISCB community for data-driven computational modelling and multi-scale analysis of biological systems

INRIA a CCSD electronic archive server(2020)10.5281/zenodo.4245269

N/A

0DataRank · unranked

0 citations

Tomáš Helikar, Matteo Barberis, Marc R. Birtwistle, Laurence Calzone, Claudine Chaouiya +7 more

A systems genomics approach uncovers molecular associates of RSV severity

PLoS Computational Biology(2021)10.1371/journal.pcbi.1009617

N/A

0DataRank · unranked

8 citations

Chin‐Yi Chu, Lu Wang, Lauren Benoodt, Juilee Thakar, Anthony Corbett +11 more

SysMod: the ISCB community for data-driven computational modelling and multi-scale analysis of biological systems

Bioinformatics(2021)10.1093/bioinformatics/btab229

N/A

0DataRank · unranked

13 citations

Tomáš Helikar, Matteo Barberis, Marc R. Birtwistle, Laurence Calzone, Claudine Chaouiya +7 more

IgE Sensitization Drives the Atopic March

American Journal of Respiratory and Critical Care Medicine(2022)10.1164/rccm.202210-2022le

N/A

0DataRank · unranked

3 citations

Maria Pesonen, Juilee Thakar, Steve N. Georas, Kirsi M. Järvinen, Lisa A. Beck

Computational modelling in health and disease: highlights of the 6th annual SysMod meeting

Bioinformatics(2022)10.1093/bioinformatics/btac609

N/A

0DataRank · unranked

3 citations

Juilee Thakar, Matteo Barberis, María Rodríguez Martínez, Tomáš Helikar, Marc R. Birtwistle +4 more

Generation and functional analysis of defective viral genomes during SARS-CoV-2 infection

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.09.22.509123

N/A

0DataRank · unranked

10 citations

Nora J. Gilliam, Sizhen Li, Simone Spaudau, Raven M. Osborn, Christopher Anderson +7 more

Executable models of immune signaling pathways in HIV-associated atherosclerosis

medRxiv(2022)10.1101/2022.03.07.22271522

N/A

0DataRank · unranked

3 citations

Rohith Palli, Alicia Tyrell, Sanjay B. Maggirwar, Giovanni Schifitto, Meera V. Singh +2 more

Executable Network Models of Integrated Multiomics Data

Journal of Proteome Research(2023)10.1021/acs.jproteome.2c00730

N/A

0DataRank · unranked

10 citations

Xiaojun Min, Alexander Crystal, Jiayue Meng, Shannon P. Hilchey, Martin S. Zand +2 more

Preparation of noninfectious scRNAseq samples from SARS-CoV-2-infected epithelial cells

PLoS ONE(2023)10.1371/journal.pone.0281898

N/A

0DataRank · unranked

5 citations

Justin M. Leach, Michelle Zanche, John M. Ashton, Chin‐Yi Chu, Juilee Thakar +7 more

Juilee Thakar

Indexed papers

Top data-sharing exemplar

Papers