A.R. Ferré-D′Amaré

Also affiliated with National Heart Lung and Blood Institute

Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 28 papers. Top paper: “The fluorescent aptamer Squash extensively repurposes the adenine riboswitch fold”.

The fluorescent aptamer Squash extensively repurposes the adenine riboswitch fold

Nature Chemical Biology(2021)10.1038/s41589-021-00931-2

N/A

1.2DataRank · unranked

42 citations

Hamed Kooshapur, Sourav Dey, Xing Li, Nico Tjandra, Samie R. Jaffrey +2 more

Structure-Guided Engineering of the Homodimeric Mango-IV Fluorescence Turn-on Aptamer Yields an RNA FRET Pair

Structure(2020)10.1016/j.str.2020.04.007

N/A

1.0DataRank · unranked

36 citations

Razvan Cojocaru, Di Wu, Grzegorz Piszczek, Michaël Ryckelynck, Peter J. Unrau +2 more

Investigating the NRAS 5′ UTR as a target for small molecules

Cell chemical biology(2023)10.1016/j.chembiol.2023.05.004

N/A

0.561DataRank · unranked

41 citations

Zachary R. Torrey, David Calabrese, Michael T. Banco, Kamyar Yazdani, Liang Xiao +8 more

Fluorogenic aptamers resolve the flexibility of RNA junctions using orientation-dependent FRET

RNA(2020)10.1261/rna.078220.120

N/A

0.520DataRank · unranked

31 citations

Robert J. Trachman, Florian P. Weissenboeck, Lynda Truong, Katie A. Link, Mette D. E. Jepsen +5 more

Symmetry breaking of fluorophore binding to a G-quadruplex generates an RNA aptamer with picomolar KD

Nucleic Acids Research(2024)10.1093/nar/gkae493

N/A

0.473DataRank · unranked

9 citations

Luiz F. M. Passalacqua, Matthew B. Nodwell, Kristen Y. S. Kong, Guillermo Caballero‐García, Elena V. Dolgosheina +4 more

Engineering Crystal Packing in RNA Structures I: Past and Future Strategies for Engineering RNA Packing in Crystals

Crystals(2021)10.3390/cryst11080952

N/A

0.406DataRank · unranked

14 citations

Stephanie Saundh, Francis A. Acquah, Blaine H. M. Mooers, A.R. Ferré-D′Amaré, Adelaine Kwun-Wai Leung +1 more

An uncommon [K+(Mg2+)2] metal ion triad imparts stability and selectivity to the Guanidine-I riboswitch

RNA(2021)10.1261/rna.078824.121

N/A

0DataRank · unranked

11 citations

A.R. Ferré-D′Amaré, Robert J. Trachman

Improving RNA Crystal Diffraction Quality by Postcrystallization Treatment

Methods in molecular biology(2021)10.1007/978-1-0716-1499-0_3

N/A

0DataRank · unranked

1 citations

A.R. Ferré-D′Amaré, Jinwei Zhang

The bacterial yjdF riboswitch regulates translation through its tRNA-like fold

Journal of Biological Chemistry(2022)10.1016/j.jbc.2022.101934

N/A

0DataRank · unranked

6 citations

Luiz F. M. Passalacqua, A.R. Ferré-D′Amaré, Robert J. Trachman

Characterizing Fluorescence Properties of Turn-on RNA Aptamers

Methods in molecular biology(2022)10.1007/978-1-0716-2687-0_3

N/A

0DataRank · unranked

2 citations

Katie A. Link, Jay R. Knutson, A.R. Ferré-D′Amaré, Robert J. Trachman

Investigating the NRAS 5’ UTR as a Target for Small Molecules

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.01.05.475055

N/A

0DataRank · unranked

5 citations

Zachary R. Torrey, David Calabrese, Michael T. Banco, Kamyar Yazdani, Liang Xiao +4 more

Intricate 3D architecture of a DNA mimic of GFP

Nature(2023)10.1038/s41586-023-06229-8

N/A

0DataRank · unranked

48 citations

Michael T. Banco, Jared D. Moon, Xing Li, Samie R. Jaffrey, A.R. Ferré-D′Amaré +1 more

Co-crystal structures of the fluorogenic aptamer Beetroot show that close homology may not predict similar RNA architecture

Nature Communications(2023)10.1038/s41467-023-38683-3

N/A

0DataRank · unranked

21 citations

Mary R. Starich, Katie A. Link, Jiahui Wu, Jay R. Knutson, Nico Tjandra +3 more

RNA-Puzzles Round V: blind predictions of 23 RNA structures

Nature Methods(2024)10.1038/s41592-024-02543-9

N/A

0DataRank · unranked

65 citations

Yagoub Adam, Ryszard W. Adamiak, Maciej Antczak, Belisa R. H. de Aquino, Nagendar Goud Badepally +94 more

RNA thermometers are widespread upstream of ABC transporter genes in bacteria

Journal of Biological Chemistry(2024)10.1016/j.jbc.2024.107547

N/A

0DataRank · unranked

4 citations

Elisha Tong, Michael A Hannani, Samantha N Shaffer, Danna Santiago, A.R. Ferré-D′Amaré +3 more

Major-groove sequence-specific RNA recognition by LoaP, a paralog of transcription elongation factor NusG

Structure(2024)10.1016/j.str.2024.06.001

N/A

0DataRank · unranked

2 citations

Madison Jermain, Wade C. Winkler, A.R. Ferré-D′Amaré, Amr Elghondakly

Structure-Informed Design of an Ultra Bright RNA-activated Fluorophore

Research Square(2024)10.21203/rs.3.rs-4750449/v1

N/A

0DataRank · unranked

1 citations

Mo Yang, Peri R. Prestwood, Luiz F. M. Passalacqua, Sumirtha Balaratnam, Christopher R. Fullenkamp +4 more

Large-scale purifications reveal yeast and human stress granule cores are heterogeneous particles with complex transcriptomes and proteomes

Cell Reports(2025)10.1016/j.celrep.2025.115738

N/A

0DataRank · unranked

8 citations

A.R. Ferré-D′Amaré, N. Demeshkina

Crystallographic and cryoEM analyses reveal SARS-CoV-2 SL5 is a mobile T-shaped four-way junction with deep pockets

RNA(2025)10.1261/rna.080413.125

N/A

0DataRank · unranked

4 citations

A.R. Ferré-D′Amaré, Christopher P. Jones

Structural basis for dual DNA and RNA specificity of the G-quadruplex-resolving DEAH-box helicase DHX36

Cell Reports(2025)10.1016/j.celrep.2025.116136

N/A

0DataRank · unranked

4 citations

Tapas Paul, Jiansen Jiang, Sua Myong, A.R. Ferré-D′Amaré, Michael T. Banco

Structure-informed design of an ultrabright RNA-activated fluorophore

Nature Chemistry(2025)10.1038/s41557-025-01832-w

N/A

0DataRank · unranked

7 citations

Peri R. Prestwood, Luiz F. M. Passalacqua, Sumirtha Balaratnam, Christopher R. Fullenkamp, J. Winston Arney +4 more

Real-time monitoring of single ZTP riboswitches reveals a complex and kinetically controlled decision landscape

Nature Communications(2020)10.1038/s41467-020-18283-1

N/A

0DataRank · unranked

60 citations

Christopher P. Jones, Jaba Mitra, Peter J. Murray, R. Scott Rosenthal, A.R. Ferré-D′Amaré +2 more

The RNA thermometer motif ROSE-G regulates ABC transporter gene expression in bacteria

Journal of Biological Chemistry(2025)10.1016/j.jbc.2025.111119

N/A

0DataRank · unranked

0 citations

Gabriel Pacheo, Alina Y. Tong, Elisha Tong, Michael A. Hannani, Lana Heganovic +7 more

Parallel Discovery Strategies Provide a Basis for Riboswitch Ligand Design

Cell chemical biology(2020)10.1016/j.chembiol.2020.07.021

N/A

0DataRank · unranked

33 citations

Patricio Pichling, Logan Tenney, Colleen M. Connelly, Michelle H. Moon, A.R. Ferré-D′Amaré +3 more

RNA-Puzzles Round III: 3D RNA structure prediction of five riboswitches and one ribozyme

UNC Libraries(2020)10.17615/rh9e-gx23

N/A

0DataRank · unranked

5 citations

Janusz M. Bujnicki, Feng Ding, Greggory M. Rice, Wipapat Kladwang, J.J. Trausch +41 more

Validating the fragment-based drug discovery strategy for targeting biological RNAs: Lead fragments specifically bind and remodel the TPP riboswitch

UNC Libraries(2020)10.17615/ace2-qp40

N/A

0DataRank · unranked

0 citations

Chris Abell, Kevin M. Weeks, Philip Homan, Alison G. Smith, K.D. Warner +1 more

The emerging structural complexity of G-quadruplex RNAs

RNA(2021)10.1261/rna.078238.120

N/A

0DataRank · unranked

116 citations

A.R. Ferré-D′Amaré, Michael T. Banco

Crystal structure of the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) frameshifting pseudoknot

RNA(2021)10.1261/rna.078825.121

N/A

0DataRank · unranked

64 citations

A.R. Ferré-D′Amaré, Christopher P. Jones