Joshua T. Herbeck

Immunology and MicrobiologyMedicineBiochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 4%percentile

0.704Author DataRank

Indexed papers

3in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 3 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Mapping of HIV-1C Transmission Networks Reveals Extensive Spread of Viral Lineages Across Villages in Botswana Treatment-as-Prevention Trial

The Journal of Infectious Diseases(2020)10.1093/infdis/jiaa276

Top 28%

0.704DataRank

Top 28%17 citations

Melissa Zahralban-Steele, Sikhulile Moyo, Tapiwa Nkhisang, Dorcas Maruapula, Mary Fran McLane +45 more

Papers

Driven by 28 papers — median percentile 36. Top paper: “An HIV Epidemic Model Based on Viral Load Dynamics: Value in Assessing Empirical Trends in HIV Virulence and Community Viral Load”.

An HIV Epidemic Model Based on Viral Load Dynamics: Value in Assessing Empirical Trends in HIV Virulence and Community Viral Load

PLoS Computational Biology(2014)10.1371/journal.pcbi.1003673

N/A

1.6DataRank · unranked

29 citations

John E. Mittler, Geoffrey S. Gottlieb, James I. Mullins, Joshua T. Herbeck

Mapping of HIV-1C Transmission Networks Reveals Extensive Spread of Viral Lineages Across Villages in Botswana Treatment-as-Prevention Trial

The Journal of Infectious Diseases(2020)10.1093/infdis/jiaa276

Top 28%

0.704DataRank

Top 28%17 citations

Melissa Zahralban-Steele, Sikhulile Moyo, Tapiwa Nkhisang, Dorcas Maruapula, Mary Fran McLane +45 more

Demographics of sources of HIV-1 transmission in Zambia: a molecular epidemiology analysis in the HPTN 071 PopART study

The Lancet Microbe(2023)10.1016/s2666-5247(23)00220-3

N/A

0.416DataRank · unranked

15 citations

Tanya Golubchik, David Bonsall, Lucie Abeler‐Dörner, Mohammed Limbada, Barry Kosloff +81 more

Phylogenetic estimates of SARS-CoV-2 introductions into Washington State

medRxiv(2021)10.1101/2021.04.05.21254924

N/A

0.345DataRank · unranked

9 citations

Alexander L. Greninger, Pavitra Roychoudhury, Lasata Shrestha, Hong Xie, Keith R. Jerome +5 more

Characteristics associated with HIV and hepatitis C seroprevalence among sexual and injecting partners of HIV positive persons who inject drugs in Nairobi and coastal Kenya

BMC Infectious Diseases(2022)10.1186/s12879-022-07036-8

N/A

0.312DataRank · unranked

7 citations

Hanley Kingston, Aliza Monroe‐Wise, Loice Mbogo, Emily Juma, Natasha Ludwig-Barron +12 more

Why does age at HIV infection correlate with set point viral load? An evolutionary hypothesis

Epidemics(2022)10.1016/j.epidem.2022.100629

N/A

0.104DataRank · unranked

1 citations

Sarah E. Stansfield, John E. Mittler, James T. Murphy, Neil F. Abernethy, Geoffrey S. Gottlieb +5 more

Assisted partner services for people who inject drugs: Index characteristics associated with untreated HIV in partners

medRxiv(2021)10.1101/2021.10.18.21265173

N/A

0DataRank · unranked

0 citations

Betsy Sambai, Aliza Monroe‐Wise, Loice Mbogo, Natasha Ludwig-Barron, Sarah Masyuko +7 more

A public health approach to monitoring HIV with resistance to HIV pre-exposure prophylaxis

PLoS ONE(2022)10.1371/journal.pone.0272958

N/A

0DataRank · unranked

4 citations

Richard Lechtenberg, Francis A. Slaughter, Joshua T. Herbeck, Roxanne P. Kerani, Matthew R. Golden +2 more

HIV-phyloTSI: Subtype-independent estimation of time since HIV-1 infection for cross-sectional measures of population incidence using deep sequence data

medRxiv(2022)10.1101/2022.05.15.22275117

N/A

0DataRank · unranked

9 citations

Lucie Abeler‐Dörner, Matthew Hall, Chris Wymant, David Bonsall, George MacIntyre-Cockett +44 more

Lessons Learned from Community Engagement Regarding Phylodynamic Research with Molecular HIV Surveillance Data

SocArXiv (OSF Preprints)(2022)10.31235/osf.io/52fy8

N/A

0DataRank · unranked

7 citations

Brian Minalga, Alfredo Trejo, Alic Shook, Roxanne P. Kerani, Joshua T. Herbeck +1 more

Africa-specific human genetic variation near CHD1L associates with HIV-1 load

Nature(2023)10.1038/s41586-023-06370-4

N/A

0DataRank · unranked

27 citations

Immacolata Porreca, Gennaro Iaconis, Hoi Ping Mok, Subhankar Mukhopadhyay, Emre Karakoç +66 more

Limited emergence of resistance to integrase strand transfer inhibitors (INSTIs) in ART-experienced participants failing dolutegravir-based antiretroviral therapy: a cross-sectional analysis of a Northeast Nigerian cohort

Journal of Antimicrobial Chemotherapy(2023)10.1093/jac/dkad195

N/A

0DataRank · unranked

26 citations

Ibrahim Musa Kida, Umar Abdullahi Maina, Amina Husaini Ibrahim, James Mshelia, Haruna Wisso +47 more

Lessons learned from community engagement regarding phylodynamic research with molecular HIV surveillance data

Journal of the International AIDS Society(2023)10.1002/jia2.26111

N/A

0DataRank · unranked

16 citations

Brian Minalga, Alfredo Trejo, Alic Shook, Roxanne P. Kerani, Joshua T. Herbeck +1 more

Prevalence and correlates of violence among sexual and injecting partners of people who inject drugs living with HIV in Kenya: a cross-sectional study

Harm Reduction Journal(2023)10.1186/s12954-023-00895-7

N/A

0DataRank · unranked

6 citations

Hanley Kingston, Loice Mbogo, Betsy Sambai, Aliza Monroe‐Wise, Natasha Ludwig-Barron +8 more

Virologic Nonsuppression and HIV Drug Resistance Among People Who Inject Drugs and Their Sexual and Injecting Partners in Kenya

AIDS Research and Human Retroviruses(2023)10.1089/aid.2023.0068

N/A

0DataRank · unranked

1 citations

Hanley Kingston, Ashley S. Tseng, Betsy Sambai, Brandon L. Guthrie, Eduan Wilkinson +11 more

SARS-CoV-2 antibody prevalence, correlates, and access to harm reduction services among people who inject drugs living with and without HIV and their partners in Kenya

Harm Reduction Journal(2023)10.1186/s12954-023-00754-5

N/A

0DataRank · unranked

3 citations

Hanley Kingston, Ashley S. Tseng, Bhavna Chohan, Betsy Sambai, Brandon L. Guthrie +10 more

Evolution of HIV virulence in response to disease-modifying vaccines: A modeling study

Vaccine(2023)10.1016/j.vaccine.2023.08.071

N/A

0DataRank · unranked

0 citations

John E. Mittler, James T. Murphy, Sarah E. Stansfield, Steven M. Goodreau, Neil F. Abernethy +2 more

Using nearly full-genome HIV sequence data improves phylogeny reconstruction in a simulated epidemic

UNC Libraries(2023)10.17615/qgaw-2t47

Top 100%

0DataRank

Top 100%0 citations

Pontiano Kaleebu, Tom Quinn, Deogratius Ssemwanga, Paul Kellam, A.J. Leigh Brown +29 more

Efficacy of assisted partner services for people who inject drugs in Kenya to identify partners living with HIV and hepatitis C virus infection: a prospective cohort study

The Lancet Global Health(2024)10.1016/s2214-109x(24)00051-2

N/A

0DataRank · unranked

5 citations

Loice Mbogo, Betsy Sambai, Natasha Ludwig-Barron, Brandon L. Guthrie, David Bukusi +13 more

Intra- and inter-subtype HIV diversity between 1994 and 2018 in southern Uganda: a longitudinal population-based study

Virus Evolution(2024)10.1093/ve/veae065

N/A

0DataRank · unranked

4 citations

Godfrey Kigozi, Michael A. Martin, Ronald M. Galiwango, Thomas C. Quinn, Andrew D. Redd +14 more

Increasing intra- and inter-subtype HIV diversity despite declining HIV incidence in Uganda

medRxiv(2024)10.1101/2024.03.14.24303990

N/A

0DataRank · unranked

2 citations

Godfrey Kigozi, Michael A. Martin, Ronald M. Galiwango, Thomas C. Quinn, Andrew D. Redd +14 more

Life Still Exists: Describing the HIV Risk Environment for Women who Inject Drugs-Living With HIV in Kenya

Drug and Alcohol Dependence(2024)10.1016/j.drugalcdep.2023.110431

N/A

0DataRank · unranked

0 citations

John A. Sauceda, Brandon L. Guthrie, Loice Mbogo, Betsy Sambai, Jane M. Simoni +10 more

A phylogenetic assessment of HIV-1 transmission trends among people who inject drugs from Coastal and Nairobi, Kenya

Virus Evolution(2024)10.1093/ve/veae092

N/A

0DataRank · unranked

0 citations

George M. Nduva, Bhavna Chohan, Loice Mbogo, Aliza Monroe‐Wise, Betsy Sambai +11 more

Risk compensation after HIV-1 vaccination may accelerate viral adaptation and reduce cost-effectiveness: a modeling study

medRxiv(2020)10.1101/2020.12.13.20248146

N/A

0DataRank · unranked

0 citations

John E. Mittler, Steven M. Goodreau, James T. Murphy, Molly C. Reid, Neil F. Abernethy +4 more

Phylogenetic Studies of Transmission Dynamics in Generalized HIV Epidemics: An Essential Tool Where the Burden is Greatest?

UCL Discovery (University College London)(2020)10.17615/757h-rh72

N/A

0DataRank · unranked

4 citations

Ann M. Dennis, Christophe Fraser, Myron S. Cohen, Joshua T. Herbeck, Paul Kellam +3 more

Participation in methadone programs improves antiretroviral uptake and HIV viral suppression among people who inject drugs in Kenya

Journal of Substance Abuse Treatment(2021)10.1016/j.jsat.2021.108587

N/A

0DataRank · unranked

15 citations

Betsy Sambai, Aliza Monroe‐Wise, Natasha Ludwig-Barron, Brandon L. Guthrie, David Bukusi +14 more

Risk compensation after HIV-1 vaccination may accelerate viral adaptation and reduce cost-effectiveness: a modeling study

Scientific Reports(2021)10.1038/s41598-021-85487-w

N/A

0DataRank · unranked

8 citations

John E. Mittler, Steven M. Goodreau, James T. Murphy, Molly C. Reid, Neil F. Abernethy +4 more

Test-and-treat coverage and HIV virulence evolution among men who have sex with men

Virus Evolution(2021)10.1093/ve/veab011

N/A

0DataRank · unranked

3 citations

Joshua T. Herbeck, Geoffrey S. Gottlieb, Neil F. Abernethy, James T. Murphy, John E. Mittler +2 more

Joshua T. Herbeck

Indexed papers

Top data-sharing exemplar

Papers