John Paul Shen

The University of Texas MD Anderson Cancer Center

Also affiliated with University of California, Los Angeles

MedicineBiochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

1in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 1 indexed paper attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Data from Sustained Disease Control in Immune Checkpoint Blockade Responders with Microsatellite Instability-high Colorectal Cancer after Treatment Termination

(2023)10.1158/2767-9764.c.6975005.v1

Top 100%

0DataRank

Top 100%0 citations

Jane V. Thomas, Kaysia Ludford, Jason Willis, Victoria Serpas Higbie, Kanwal Raghav +15 more

Papers

Driven by 41 papers — median percentile 0. Top paper: “Patient-derived micro-organospheres enable clinical precision oncology”.

Patient-derived micro-organospheres enable clinical precision oncology

Cell stem cell(2022)10.1016/j.stem.2022.04.006

N/A

0.806DataRank · unranked

214 citations

Carolyn Hsu, Zhaohui Wang, Naveen Natesh, Rosemary Millen, Marcos Negrete +32 more

Estimation of tumor cell total mRNA expression in 15 cancer types predicts disease progression

Nature Biotechnology(2022)10.1038/s41587-022-01342-x

N/A

0.652DataRank · unranked

76 citations

Jennifer Wang, Shuangxi Ji, Yang Peng, Yaoyi Dai, Shuai Guo +35 more

Chromatin Remodeling of Colorectal Cancer Liver Metastasis is Mediated by an HGF‐PU.1‐DPP4 Axis

Advanced Science(2021)10.1002/advs.202004673

N/A

0.533DataRank · unranked

34 citations

Ergang Wang, Jorge Prado Balcazar, Zhenhua Wu, Kun Xiang, Yi Wang +22 more

Gene signatures derived from transcriptomic-causal networks stratify colorectal cancer patients for effective targeted therapy

Communications Medicine(2025)10.1038/s43856-024-00728-z

N/A

0.292DataRank · unranked

6 citations

Heinz‐Josef Lenz, Gianluigi Pillonetto, Raúl Méndez-Giráldez, Hanna K. Sanoff, Reza Hadi +17 more

A deconvolution framework that uses single-cell sequencing plus a small benchmark data set for accurate analysis of cell type ratios in complex tissue samples

Genome Research(2024)10.1101/gr.278822.123

N/A

0.213DataRank · unranked

3 citations

Xiaoqian Liu, Xuesen Cheng, Yujie Jiang, Shuangxi Ji, Qingnan Liang +14 more

PMC: A more precise classifier of POLE mutations to identify candidates for immune therapy.

Journal of Clinical Oncology(2021)10.1200/jco.2021.39.15_suppl.3548

N/A

0.104DataRank · unranked

1 citations

Benjamin Garmezy, Timothy A. Yap, John Paul Shen, Fadl A. Zeineddine

Tumor cell total mRNA expression shapes the molecular and clinical phenotype of cancer

Research Square(2021)10.21203/rs.3.rs-600171/v1

N/A

0DataRank · unranked

2 citations

Jennifer Wang, Shuangxi Ji, Yang Peng, Matthew D. Montierth, Shuai Guo +32 more

Epigenetic regulation of the Wnt-signaling pathway in CIMP-H BRAFV600E mCRC.

Journal of Clinical Oncology(2021)10.1200/jco.2021.39.3_suppl.110

N/A

0DataRank · unranked

0 citations

Stefania Napolitano, Van K. Morris, Kunal Rai, John Paul Shen, Jennifer S. Davis +8 more

Cyclospora cayetanensis comprises at least 3 species that cause human cyclosporiasis

Parasitology(2022)10.1017/s003118202200172x

N/A

0DataRank · unranked

41 citations

John Paul Shen, Katelyn Houghton, Travis Richins, Sarah G. H. Sapp, Vitaliano Cama +4 more

Phase 2 study of anti-EGFR rechallenge therapy with panitumumab with or without trametinib in advanced colorectal cancer.

Journal of Clinical Oncology(2022)10.1200/jco.2022.40.16_suppl.3520

N/A

0DataRank · unranked

9 citations

Eduardo Vilar Sanchez, Ryan Sun, Madhulika Eluri, Van K. Morris, Benny Johnson +11 more

Encorafenib, cetuximab, and cytotoxic chemotherapy combinations in BRAFV600E CRC murine models.

Journal of Clinical Oncology(2022)10.1200/jco.2022.40.4_suppl.145

N/A

0DataRank · unranked

0 citations

Vincenzo De Falco, Claudia Prisco, Giulia Martini, Luigi Pio Guerrera, Valentina Belli +11 more

RAS co-mutation and early onset disease represent an aggressive phenotype of atypical (non-V600) BRAF mutant metastatic colorectal cancer.

Journal of Clinical Oncology(2022)10.1200/jco.2022.40.16_suppl.3592

N/A

0DataRank · unranked

0 citations

Dongyun Yang, Hiba I. Dada, Van K. Morris, Xuemei Wang, Arvind Dasari +14 more

Oncogenic KRAS Drives Lipofibrogenesis to Promote Angiogenesis and Colon Cancer Progression

Cancer Discovery(2023)10.1158/2159-8290.cd-22-1467

N/A

0DataRank · unranked

116 citations

Kyle A. LaBella, Yiyun Lin, Ping Xu, Rumi Lee, Cheng‐En Hsieh +14 more

Identification of Colorectal Cancer Cell Stemness from Single-Cell RNA Sequencing

Molecular Cancer Research(2023)10.1158/1541-7786.mcr-23-0468

N/A

0DataRank · unranked

26 citations

Saikat Chowdhury, Mohammad A. Zeineddine, Fadl A. Zeineddine, Nicholas J. Hornstein, Oscar E. Villarreal +9 more

Sustained Disease Control in Immune Checkpoint Blockade Responders with Microsatellite Instability-high Colorectal Cancer after Treatment Termination

Cancer Research Communications(2023)10.1158/2767-9764.crc-23-0340

N/A

0DataRank · unranked

15 citations

Jane V. Thomas, Kaysia Ludford, Jason Willis, Victoria Serpas Higbie, Kanwal Raghav +15 more

Utility of circulating tumor DNA (ctDNA) in the management of appendiceal adenocarcinoma (AA).

Journal of Clinical Oncology(2023)10.1200/jco.2023.41.4_suppl.226

N/A

0DataRank · unranked

8 citations

Fadl A. Zeineddine, Abdelrahman Yousef, Julia Dansby, Michael G. White, Michael J. Overman +7 more

Goblet cell tumors of the appendix: Clinical and molecular features.

Journal of Clinical Oncology(2023)10.1200/jco.2023.41.4_suppl.223

N/A

0DataRank · unranked

0 citations

Zahra Alavi Naini, Mohammad A. Zeineddine, Saikat Chowdhury, Julia Dansby, Aditya More +6 more

Utility of tumor marker levels in predicting survival of patients with appendiceal adenocarcinoma.

Journal of Clinical Oncology(2023)10.1200/jco.2023.41.4_suppl.221

N/A

0DataRank · unranked

0 citations

Aditya More, Mohammad A. Zeineddine, Saikat Chowdhury, Yue Gu, Julia Dansby +7 more

A prospective randomized crossover trial of systemic chemotherapy in patients with low-grade mucinous appendiceal adenocarcinoma.

Journal of Clinical Oncology(2023)10.1200/jco.2023.41.4_suppl.163

N/A

0DataRank · unranked

0 citations

Abdelrahman Yousef, Fadl A. Zeineddine, Mohammad A. Zeineddine, Karen A. Beaty, Lisa C. Scofield +15 more

Data from ARID1A Mutation May Define an Immunologically Active Subgroup in Patients with Microsatellite Stable Colorectal Cancer

(2023)10.1158/1078-0432.c.6530583

N/A

0DataRank · unranked

0 citations

Jumanah Alshenaifi, Jason Roszik, Ganiraju C. Manyam, Shailesh Advani, Riham Katkhuda +13 more

Data from ARID1A Mutation May Define an Immunologically Active Subgroup in Patients with Microsatellite Stable Colorectal Cancer

(2023)10.1158/1078-0432.c.6530583.v1

N/A

0DataRank · unranked

0 citations

Jumanah Alshenaifi, Jason Roszik, Ganiraju C. Manyam, Shailesh Advani, Riham Katkhuda +13 more

Data from Bintrafusp Alfa, an Anti-PD-L1:TGFβ Trap Fusion Protein, in Patients with ctDNA-positive, Liver-limited Metastatic Colorectal Cancer

(2023)10.1158/2767-9764.c.6550830.v1

N/A

0DataRank · unranked

0 citations

Michael J. Overman, Michael Hon‐Wah Lam, Christine M. Parseghian, Benny Johnson, Arvind Dasari +17 more

Establishing functional models of peritoneal carcinomatosis using MicroOrganoSphere (MOS) technology.

Journal of Clinical Oncology(2023)10.1200/jco.2023.41.16_suppl.e16337

N/A

0DataRank · unranked

0 citations

Aaron K. McCormick, Amber Smith, Ichiaki Ito, Mahmoud M.G. Yousef, Mohammad A. Zeineddine +7 more

Prognostic and predictive significance of pre- and post-operative plasma tumor markers in patients with appendiceal adenocarcinoma undergoing cytoreductive surgery: Insights from a single-center study.

Journal of Clinical Oncology(2023)10.1200/jco.2023.41.16_suppl.3539

N/A

0DataRank · unranked

0 citations

Mahmoud Yousef, Mohammad A. Zeineddine, Ichiaki Ito, Saikat Chowdhury, Yue Gu +15 more

DeMixSC: a deconvolution framework that uses single-cell sequencing plus a small benchmark dataset for improved analysis of cell-type ratios in complex tissue samples

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.10.10.561733

N/A

0DataRank · unranked

0 citations

Xiaoqian Liu, Xuesen Cheng, Yujie Jiang, Shuangxi Ji, Qingnan Liang +12 more

Data from Sustained Disease Control in Immune Checkpoint Blockade Responders with Microsatellite Instability-high Colorectal Cancer after Treatment Termination

(2023)10.1158/2767-9764.c.6975005.v1

Top 100%

0DataRank

Top 100%0 citations

Jane V. Thomas, Kaysia Ludford, Jason Willis, Victoria Serpas Higbie, Kanwal Raghav +15 more

A multilineage screen identifies actionable synthetic lethal interactions in human cancers

Nature Genetics(2024)10.1038/s41588-024-01971-9

N/A

0DataRank · unranked

15 citations

Brent M. Kuenzi, Nicole M. Mattson, John J. Y. Lee, Kyle S. Sanchez, Ana Bojorquez-Gomez +11 more

Molecular Hallmarks of Prostate-specific Membrane Antigen in Treatment-naïve Prostate Cancer

European Urology(2024)10.1016/j.eururo.2024.09.005

N/A

0DataRank · unranked

14 citations

Raag Agrawal, Nicholas K. Wang, Ida Sonni, Eric V. Li, Jaron Arbet +22 more

Efficacy and Safety of Atezolizumab and Bevacizumab in Appendiceal Adenocarcinoma

Cancer Research Communications(2024)10.1158/2767-9764.crc-24-0019

N/A

0DataRank · unranked

11 citations

Mohammad A. Zeineddine, Betul Beyza Gunes, Andrew J. Pellatt, Mark Knafl, Haifeng Zhu +12 more

Single-cell RNA sequencing of appendiceal adenocarcinoma reveals a low proportion of epithelial cells and a fibroblast enriched tumor microenvironment

ESMO Gastrointestinal Oncology(2024)10.1016/j.esmogo.2024.100094

N/A

0DataRank · unranked

2 citations

Nicholas J. Hornstein, Michael Wang, Malik Yousef, Mohammad Mahdi Fanaeian, Abdelrahman Yousef +7 more

Mutational and co-mutational landscape of early onset colorectal cancer

Biomarkers(2025)10.1080/1354750x.2024.2447089

N/A

0DataRank · unranked

24 citations

Guglielmo Vetere, Giulia Maddalena, Mahmoud Yousef, Michael G. White, John Paul Shen +14 more

Results of the Phase I/II Study and Preliminary B-cell Gene Signature of Combined Inhibition of Glutamine Metabolism and EGFR in Colorectal Cancer

Clinical Cancer Research(2025)10.1158/1078-0432.ccr-24-3133

N/A

0DataRank · unranked

16 citations

Seong-Woo Bae, Jennifer G. Whisenant, Gregory D. Ayers, Quanhu Sheng, Todd E. Peterson +15 more

Consensus guideline for the management of colorectal cancer with peritoneal metastases

Cancer(2025)10.1002/cncr.35869

N/A

0DataRank · unranked

5 citations

Varun Bansal, Michael M. Wach, Neal Bhutiani, Frederick A. Godley, Jane Wang +19 more

Tumoral and circulating genomic landscape inform survival differences in colorectal carcinomatosis

Translational Oncology(2025)10.1016/j.tranon.2025.102379

N/A

0DataRank · unranked

0 citations

Reed I. Ayabe, Mohammad A. Zeineddine, Fadl A. Zeineddine, Abdelrahman Yousef, Mahmoud Yousef +12 more

Relative Abundance of SARS-CoV-2 Entry Genes in the Enterocytes of the Lower Gastrointestinal Tract

Genes(2020)10.3390/genes11060645

N/A

0DataRank · unranked

70 citations

Scott Kopetz, Eduardo Vilar, John Paul Shen, Ken Chen, Anirban Maitra +1 more

Gene signatures derived from transcriptomic-causal networks stratify colorectal cancer patients for effective targeted therapy

UNC Libraries(2025)10.17615/rbz3-7m15

N/A

0DataRank · unranked

0 citations

Scott Kopetz, Rashid, Naim U, Mark J. Ratain, Esmat Samiei, Federico Innocenti +18 more

Integrated clinico-molecular profiling of appendiceal adenocarcinoma reveals a unique grade-driven entity distinct from colorectal cancer

British Journal of Cancer(2020)10.1038/s41416-020-1015-3

N/A

0DataRank · unranked

48 citations

John Paul Shen, Alexandre A. Jácome, Jennifer L. Guerra, Christopher P. Scally, Melissa W. Taggart +7 more

Relative Abundance of SARS-CoV-2 Entry Genes in the Enterocytes of the Lower Gastrointestinal Tract

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.04.08.033001

N/A

0DataRank · unranked

21 citations

Scott Kopetz, Eduardo Vilar, John Paul Shen, Ken Chen, Anirban Maitra +1 more

Tumor cell total mRNA expression shapes the molecular and clinical phenotype of cancer

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.09.30.306795

N/A

0DataRank · unranked

5 citations

Jennifer Wang, Shuangxi Ji, Yang Peng, Matthew D. Montierth, Shuai Guo +32 more

Multi-tiered genomic analysis of head and neck cancer ties TP53 mutation to 3p loss

UNC Libraries(2020)10.17615/seks-5275

N/A

0DataRank · unranked

0 citations

Scott M. Lippman, Ezra E.W. Cohen, Trey Ideker, Ann Marie Egloff, John Paul Shen +8 more

ARID1A Mutation May Define an Immunologically Active Subgroup in Patients with Microsatellite Stable Colorectal Cancer

Clinical Cancer Research(2021)10.1158/1078-0432.ccr-20-2404

N/A

0DataRank · unranked

52 citations

Jumanah Alshenaifi, Jason Roszik, Ganiraju C. Manyam, Shailesh Advani, Riham Katkhuda +13 more

John Paul Shen

Indexed papers

Top data-sharing exemplar

Papers