Xinghua Shi

Biochemistry, Genetics and Molecular BiologyComputer Science

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

45.8Author DataRank

Indexed papers

11in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 11 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

A global reference for human genetic variation

Nature(2015)10.1038/nature15393

Top 1%

10.6DataRank

Top 1%20166 citations

Gonçalo R. Abecasis, Richard M. Durbin, Panagiotis Deloukas, Aravinda Chakravarti, Peter Donnelly +516 more

Papers

Driven by 31 papers — median percentile 89. Top paper: “A global reference for human genetic variation”.

A global reference for human genetic variation

Nature(2015)10.1038/nature15393

Top 1%

10.6DataRank

Top 1%20166 citations

Gonçalo R. Abecasis, Richard M. Durbin, Panagiotis Deloukas, Aravinda Chakravarti, Peter Donnelly +516 more

A map of human genome variation from population-scale sequencing

Nature(2010)10.1038/nature09534

Top 2%

9.1DataRank

Top 2%8109 citations

Min Hu, Yuan Chen, Matthew N. Bainbridge, Richard M. Durbin, Si Quang Le +319 more

An integrated map of structural variation in 2,504 human genomes

Nature(2015)10.1038/nature15394

Top 2%

9.1DataRank

Top 2%2686 citations

Tobias Rausch, Marianne K. DeGorter, Robert E. Handsaker, Alexej Abyzov, Joanna M. M. Howson +75 more

Integrating sequence and array data to create an improved 1000 Genomes Project haplotype reference panel

Nature Communications(2014)10.1038/ncomms4934

Top 2%

8.3DataRank

Top 2%460 citations

Jonathan Marchini, Peter Donnelly, Gerton Lunter, Jonathan L. Marchini, Simon Myers +364 more

Haplotype-resolved diverse human genomes and integrated analysis of structural variation

Science(2021)10.1126/science.abf7117

Top 4%

5.7DataRank

Top 4%812 citations

Peter A. Audano, Qihui Zhu, Bernardo Rodríguez–Martín, David Porubsky, Marc Jan Bonder +60 more

Accurate recognition of colorectal cancer with semi-supervised deep learning on pathological images

Nature Communications(2021)10.1038/s41467-021-26643-8

N/A

4.7DataRank · unranked

142 citations

Kai Sun, Chao Xu, Xinghua Shi, Chong Wu, Ting Xie +6 more

Complex genetic variation in nearly complete human genomes

Nature(2025)10.1038/s41586-025-09140-6

Top 19%

1.1DataRank

Top 19%83 citations

Peter Ebert, Peter A. Audano, Mark Loftus, David Porubsky, Feyza Yilmaz +62 more

An autoencoder-based deep learning method for genotype imputation

Frontiers in Artificial Intelligence(2022)10.3389/frai.2022.1028978

N/A

0.827DataRank · unranked

21 citations

Jonathan Greenbaum, Joseph Luttrell, Weihua Zhou, Chong Wu, Zhe Luo +11 more

Complex genetic variation in nearly complete human genomes

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.09.24.614721

Top 27%

0.741DataRank

Top 27%27 citations

Peter Ebert, Peter A. Audano, Mark Loftus, David Porubsky, Feyza Yilmaz +62 more

Assembly of 43 human Y chromosomes reveals extensive complexity and variation

Nature(2023)10.1038/s41586-023-06425-6

N/A

0.721DataRank · unranked

121 citations

Peter Ebert, Mark Loftus, Feyza Yilmaz, Peter A. Audano, Glennis A. Logsdon +27 more

Assembly of 43 diverse human Y chromosomes reveals extensive complexity and variation

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.12.01.518658

Top 37%

0.528DataRank

Top 37%9 citations

Peter Ebert, Mark Loftus, Feyza Yilmaz, Peter A. Audano, Glennis A. Logsdon +27 more

QTL Analysis Beyond eQTLs

Methods in Molecular Biology(2020)10.1007/978-1-0716-0026-9_14

N/A

0.500DataRank · unranked

7 citations

Conor Nodzak, Xinghua Shi, Jia Wen

Impact and characterization of serial structural variations across humans and great apes

Nature Communications(2024)10.1038/s41467-024-52027-9

N/A

0.385DataRank · unranked

12 citations

Tobias Rausch, Michael Jendrusch, Hufsah Ashraf, Peter A. Audano, Ola Austine +49 more

A comprehensive catalog of 3D genome organization in diverse human genomes facilitates understanding of the impact of structural variation on chromatin structure

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.05.15.540856

Top 49%

0.360DataRank

Top 49%5 citations

Marc Jan Bonder, Sabriya A. Syed, HGSVC Functional Analysis Working Group, Michael C. Zody, Mark J. P. Chaisson +7 more

STICI: Split-Transformer with integrated convolutions for genotype imputation

Nature Communications(2025)10.1038/s41467-025-56273-3

N/A

0.330DataRank · unranked

8 citations

Chong Li, Oveis Jamialahmadi, Raquel Dias, Junjie Chen, Benyamin Jamialahmadi +5 more

De novo assembly of 64 haplotype-resolved human genomes of diverse ancestry and integrated analysis of structural variation

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.12.16.423102

Top 53%

0.322DataRank

Top 53%5 citations

Peter A. Audano, Qihui Zhu, Bernardo Rodríguez–Martín, David Porubsky, Marc Jan Bonder +58 more

Structural and transduction patterns of human-specific polymorphic SVA insertions

Mobile DNA(2025)10.1186/s13100-025-00373-w

N/A

0.104DataRank · unranked

1 citations

Mark Loftus, Emily C. Golba, Haley Abel, Hufsah Ashraf, Peter A. Audano +64 more

ER stress mediates Angiotensin II-augmented innate immunity memory and facilitates distinct susceptibilities of thoracic from abdominal aorta to aneurysm development

Frontiers in Immunology(2023)10.3389/fimmu.2023.1268916

N/A

0DataRank · unranked

21 citations

Yu Sun, Fatma Saaoud, Ying Shao, Keman Xu, Xiaohua Jiang +9 more

Enhancing Fairness in Disease Prediction by Optimizing Multiple Domain Adversarial Networks

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.08.04.551906

N/A

0DataRank · unranked

5 citations

Xinghua Shi, Hongchang Gao, Xiaoqian Jiang, Kai Zhang, Arif Harmanci +2 more

Innate immunity of vascular smooth muscle cells contributes to two-wave inflammation in atherosclerosis, twin-peak inflammation in aortic aneurysms and trans-differentiation potential into 25 cell types

Frontiers in Immunology(2024)10.3389/fimmu.2023.1348238

N/A

0DataRank · unranked

31 citations

Fatma Saaoud, Yifan Lu, Yujiang Pu, Keman Xu, Ying Shao +14 more

Genomic alterations and abnormal expression of APE2 in multiple cancers

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.01.17.910646

N/A

0DataRank · unranked

0 citations

Xinghua Shi, Shan Yan, Katherine A. Jensen

Accurate recognition of colorectal cancer with semi-supervised deep learning on pathological images

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.07.13.201582

N/A

0DataRank · unranked

11 citations

Ting Xie, Chao Xu, Xinghua Shi, Chong Wu, Kai Sun +6 more

An integrative TAD catalog in lymphoblastoid cell lines discloses the functional impact of deletions and insertions in human genomes

Genome Research(2024)10.1101/gr.279419.124

N/A

0DataRank · unranked

2 citations

Marc Jan Bonder, Sabriya A. Syed, Matthew Jensen, HGSVC Functional Analysis Working Group, Mark Gerstein +9 more

DKGM: A diffusion knowledge graph model for medication recommendation leveraging medical and drug information

(2025)10.1109/ichi64645.2025.00039

N/A

0DataRank · unranked

2 citations

Pei Wang, Xinghua Shi, Yang Zhao

TRUHiC: A TRansformer-embedded U-2 Net to enhance Hi-C data for 3D chromatin structure characterization

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.03.29.646133

N/A

0DataRank · unranked

0 citations

Mohammad Erfan Mowlaei, Lingbin Ni, HGSVC Functional Analysis Working Group, Mark J.P. Chaisson, Evan E. Eichler +4 more

Uncertainty Quantification of Conformalized Spatio-Temporal Graph Convolutional Network on Forecasting

(2025)10.1109/icdm65498.2025.00184

N/A

0DataRank · unranked

0 citations

Yuzhou Chen, Xinghua Shi, Yang Zhao

Uncertainty Quantification of Conformalized Spatio-Temporal Graph Convolutional Network on Forecasting

(2025)10.1109/icdmw69685.2025.00269

N/A

0DataRank · unranked

0 citations

Y. Chen, Xinghua Shi, Yang Zhao

Impact of Missense Mutations on Spike Protein Stability and Binding Affinity in the Omicron Variant

Viruses(2024)10.3390/v16071150

N/A

0DataRank · unranked

4 citations

Adebiyi Sobitan, Qiaobin Yao, Xinghua Shi, Hong Qin, Dawit Kidane +3 more

A parallelized strategy for epistasis analysis based on Empirical Bayesian Elastic Net models

Bioinformatics(2020)10.1093/bioinformatics/btaa216

N/A

0DataRank · unranked

4 citations

Colby T. Ford, Daniel Janies, Xinghua Shi, Jia Wen

Genomic alterations and abnormal expression of APE2 in multiple cancers

Scientific Reports(2020)10.1038/s41598-020-60656-5

N/A

0DataRank · unranked

30 citations

Xinghua Shi, Shan Yan, Katherine A. Jensen

Association of CNVs with methylation variation

npj Genomic Medicine(2020)10.1038/s41525-020-00145-w

N/A

0DataRank · unranked

36 citations

Saranya Radhakrishnan, Jia Wen, Jin Yun Chen, Junjie Chen, Brianna A. Lam +5 more

Xinghua Shi

Indexed papers

Top data-sharing exemplar

Papers