Shannon Takala‐Harrison

MedicineBiochemistry, Genetics and Molecular BiologyImmunology and Microbiology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 42 papers. Top paper: “Strains used in whole organism Plasmodium falciparum vaccine trials differ in genome structure, sequence, and immunogenic potential”.

Strains used in whole organism Plasmodium falciparum vaccine trials differ in genome structure, sequence, and immunogenic potential

Genome Medicine(2020)10.1186/s13073-019-0708-9

N/A

0.673DataRank · unranked

88 citations

Elliott F. Drábek, Ankit Dwivedi, Emily M. Stucke, Jonathan Crabtree, Antoine Dara +29 more

Integration of population and functional genomics to understand mechanisms of artemisinin resistance in Plasmodium falciparum

International Journal for Parasitology Drugs and Drug Resistance(2021)10.1016/j.ijpddr.2021.05.006

N/A

0.464DataRank · unranked

21 citations

Linda Ines Zoungrana, Carl D. Bannerman, Samira Jahangiri, Ankit Dwivedi, Joana C. Silva +3 more

Epitope-Specific Antibody Responses to a Plasmodium falciparum Subunit Vaccine Target in a Malaria-Endemic Population

The Journal of Infectious Diseases(2020)10.1093/infdis/jiaa611

N/A

0.405DataRank · unranked

7 citations

Mark A. Travassos, Olukemi O. Ifeonu, Sonia Agrawal, Amed Ouattara, Andrew Pike +16 more

Understanding work-related travel and its relation to malaria occurrence in Thailand using geospatial maximum entropy modelling

Malaria Journal(2023)10.1186/s12936-023-04478-6

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0.396DataRank · unranked

13 citations

Kathleen Stewart, Yao Li, Siriporn Sornsakrin, Nichaphat Uthaimongkol, Worachet Kuntawunginn +9 more

Malian children infected with Plasmodium ovale and Plasmodium falciparum display very similar gene expression profiles

PLoS neglected tropical diseases(2023)10.1371/journal.pntd.0010802

N/A

0.385DataRank · unranked

12 citations

Salif Yirampo, Drissa Coulibaly, Abdoulaye K. Koné, Matthew B. Laurens, Emily M. Stucke +14 more

Epitope-based sieve analysis of Plasmodium falciparum sequences from a FMP2.1/AS02A vaccine trial is consistent with differential vaccine efficacy against immunologically relevant AMA1 variants

Vaccine(2020)10.1016/j.vaccine.2020.06.035

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0.373DataRank · unranked

11 citations

Amadou Niangaly, Matthew Adams, Drissa Coulibaly, Abdoulaye K. Koné, Karim Traoré +12 more

Malian adults maintain serologic responses to virulent PfEMP1s amid seasonal patterns of fluctuation

Scientific Reports(2021)10.1038/s41598-021-92974-7

N/A

0.312DataRank · unranked

7 citations

Emily M. Stucke, Drissa Coulibaly, Andrea A. Berry, Kirsten E. Lyke, Matthew B. Laurens +12 more

No evidence of amplified Plasmodium falciparum plasmepsin II gene copy number in an area with artemisinin-resistant malaria along the China–Myanmar border

Malaria Journal(2020)10.1186/s12936-020-03410-6

N/A

0.292DataRank · unranked

6 citations

Biraj Shrestha, Hui Liu, Lin-hua Tang, Shuisen Zhou, Xiao‐Nong Zhou +5 more

Plasmodium vivax antigen candidate prediction improves with the addition of Plasmodium falciparum data

npj Systems Biology and Applications(2024)10.1038/s41540-024-00465-y

N/A

0.208DataRank · unranked

3 citations

Amed Ouattara, Shannon Takala‐Harrison, Michael P. Cummings, Renee Ti Chou

Genomic Epidemiology of Antimalarial Drug Resistance in Plasmodium falciparum in Southern China

Frontiers in Cellular and Infection Microbiology(2021)10.3389/fcimb.2020.610985

N/A

0.165DataRank · unranked

2 citations

Christopher G. Jacob, Shannon Takala‐Harrison, Matthew Adams, Henglin Yang, Hui Liu +5 more

Plasmodium falciparum gene expression signatures and antibody profiling implicate the fikk, phist, and surf multigene families in severe malaria syndromes

Journal of Infection(2025)10.1016/j.jinf.2025.106655

N/A

0.104DataRank · unranked

1 citations

Emily M. Stucke, Drissa Coulibaly, Jonathan G. Lawton, Rafal S. Sobota, Abdoulaye K. Koné +36 more

Whole-genome analysis of Malawian Plasmodium falciparum isolates identifies potential targets of allele-specific immunity to clinical malaria

medRxiv(2020)10.1101/2020.09.16.20196253

N/A

0.104DataRank · unranked

1 citations

Myo Naung, Kara A. Moser, Matthew Adams, Andrea G. Buchwald, Ankit Dwivedi +9 more

Natural immunity to malaria preferentially targets the endothelial protein C receptor-binding regions of PfEMP1s

mSphere(2023)10.1128/msphere.00451-23

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0DataRank · unranked

6 citations

Drissa Coulibaly, Jonathan G. Lawton, Emily M. Stucke, Albert E Zhou, Andrea A. Berry +21 more

Strong Positive Selection Biases Identity-By-Descent-Based Inferences of Recent Demography and Population Structure in Plasmodium falciparum

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.07.14.549114

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0DataRank · unranked

2 citations

Víctor Borda, Roland Laboulaye, Michele Spring, Mariusz Wojnarski, Brian A. Vesely +5 more

Gene expression analyses reveal differences in children’s response to malaria according to their age

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.10.24.563751

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0DataRank · unranked

0 citations

Salif Yirampo, Drissa Coulibaly, Abdoulaye K. Koné, Matthew B. Laurens, Emily M. Stucke +14 more

Gene expression analyses reveal differences in children’s response to malaria according to their age

Research Square(2023)10.21203/rs.3.rs-3487114/v1

N/A

0DataRank · unranked

0 citations

Salif Yirampo, Drissa Coulibaly, Abdoulaye K. Koné, Matthew B. Laurens, Emily M. Stucke +14 more

Strong positive selection biases identity-by-descent-based inferences of recent demography and population structure in Plasmodium falciparum

Nature Communications(2024)10.1038/s41467-024-46659-0

N/A

0DataRank · unranked

35 citations

Víctor Borda, Roland Laboulaye, Michele Spring, Mariusz Wojnarski, Brian A. Vesely +5 more

Gene expression analyses reveal differences in children’s response to malaria according to their age

Nature Communications(2024)10.1038/s41467-024-46416-3

N/A

0DataRank · unranked

11 citations

Salif Yirampo, Drissa Coulibaly, Abdoulaye K. Koné, Matthew B. Laurens, Emily M. Stucke +14 more

Positive-unlabeled learning identifies vaccine candidate antigens in the malaria parasite Plasmodium falciparum

npj Systems Biology and Applications(2024)10.1038/s41540-024-00365-1

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0DataRank · unranked

10 citations

Amed Ouattara, Matthew Adams, Andrea A. Berry, Shannon Takala‐Harrison, Michael P. Cummings +1 more

Genotyping Plasmodium falciparum gametocytes using amplicon deep sequencing

Malaria Journal(2024)10.1186/s12936-024-04920-3

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0DataRank · unranked

3 citations

Natalie A. Horstman, Matthew Adams, Karl B. Seydel, Robert S. McCann, Lauren M. Cohee +3 more

Children with hemoglobin C or S trait have low serologic responses to a subset of malaria variant surface antigens

Journal of Infection(2024)10.1016/j.jinf.2024.106257

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0DataRank · unranked

3 citations

Jonathan G. Lawton, Amadou Niangaly, Emily M. Stucke, Jason A. Bailey, Andrea A. Berry +21 more

Variation in spatial population structure in the Anopheles gambiae species complex

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.05.26.595955

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0DataRank · unranked

4 citations

Jean-Paul Courneya, Martin J. Donnelly, Miriam K. Laufer, Themba Mzilahowa, Kathleen Stewart +6 more

Potential and pitfalls of using identity-by-descent for malaria genomic surveillance

Trends in Parasitology(2025)10.1016/j.pt.2025.03.012

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0DataRank · unranked

8 citations

Emma Rowley, Timothy D. O’Connor, Shannon Takala‐Harrison, Bing Guo

Whole-genome sieve analysis: Identification of protective malaria antigens by leveraging allele-specific vaccine efficacy

Vaccine(2025)10.1016/j.vaccine.2025.126783

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0DataRank · unranked

5 citations

Ankit Dwivedi, Thomas C. Stabler, Gillian Mbambo, Amed Ouattara, Kirsten E. Lyke +3 more

Diamonds in the rif: Alignment-free comparative genomics analysis reveals strain-transcendent Plasmodium falciparum antigens amidst extensive genetic diversity

Infection Genetics and Evolution(2025)10.1016/j.meegid.2025.105725

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0DataRank · unranked

3 citations

Albert E Zhou, Emily M. Stucke, Shannon Takala‐Harrison, Joana C. Silva, Mark A. Travassos +1 more

Benchmarking and optimization of methods for the detection of identity-by-descent in high-recombining Plasmodium falciparum genomes

eLife(2025)10.7554/elife.101924

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0DataRank · unranked

1 citations

Shannon Takala‐Harrison, Timothy D. O’Connor, Bing Guo

Protective targets of PfSPZ vaccines identified from whole-genome sieve analysis of isolates from malaria vaccine efficacy trials in West Africa

medRxiv(2025)10.1101/2025.03.04.25323352

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0DataRank · unranked

1 citations

Ryan J. Scalsky, David G. Harris, Thomas C. Stabler, Biraj Shrestha, Sudhaunshu Joshi +18 more

hmmibd-rs: An enhanced hmmIBD implementation for parallelizable identity-by-descent detection from large-scale Plasmodium genomic data

Research Square(2025)10.21203/rs.3.rs-7004070/v1

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0DataRank · unranked

0 citations

S. F. Schaffner, Aimee R. Taylor, Timothy D. O’Connor, Shannon Takala‐Harrison, Bing Guo

Benchmarking and Optimization of Methods for the Detection of Identity-By-Descent in High-Recombining Plasmodium falciparum Genomes

eLife(2025)10.7554/elife.101924.2

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0DataRank · unranked

0 citations

Shannon Takala‐Harrison, Timothy D. O’Connor, Bing Guo

Benchmarking and optimization of methods for the detection of identity-by-descent in high-recombining Plasmodium falciparum genomes

eLife(2025)10.7554/elife.101924.3

N/A

0DataRank · unranked

0 citations

Shannon Takala‐Harrison, Timothy D. O’Connor, Bing Guo

Controlled human malaria infection with NF54 and 7G8 strains elicit differential antibody responses to Plasmodium falciparum peptides

Frontiers in Immunology(2025)10.3389/fimmu.2025.1641280

N/A

0DataRank · unranked

0 citations

Travis L. Jensen, Kirsten E. Lyke, Matthew B. Laurens, Joana C. Silva, Emily M. Stucke +15 more

Optimization of parasite DNA enrichment approaches to generate whole genome sequencing data for Plasmodium falciparum from low parasitaemia samples

Malaria Journal(2020)10.1186/s12936-020-03195-8

N/A

0DataRank · unranked

22 citations

Matthew Adams, Kara A. Moser, Biraj Shrestha, Emily M. Stucke, Miriam K. Laufer +4 more

Detecting geospatial patterns of Plasmodium falciparum parasite migration in Cambodia using optimized estimated effective migration surfaces

International Journal of Health Geographics(2020)10.1186/s12942-020-00207-3

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0DataRank · unranked

11 citations

Amol C. Shetty, Chanthap Lon, Michele Spring, David Saunders, Mark M. Fukuda +9 more

Host and Parasite Transcriptomic Changes upon Successive Plasmodium falciparum Infections in Early Childhood

mSystems(2020)10.1128/msystems.00116-20

N/A

0DataRank · unranked

10 citations

Drissa Coulibaly, Abdoulaye K. Koné, Matthew B. Laurens, Ahmadou Dembélé, Youssouf Tolo +12 more

Microarray analyses reveal strain-specific antibody responses to Plasmodium falciparum apical membrane antigen 1 variants following natural infection and vaccination

Scientific Reports(2020)10.1038/s41598-020-60551-z

N/A

0DataRank · unranked

35 citations

Andrea A. Berry, Mark A. Travassos, Amed Ouattara, Sarah Boudová, Emmanuel Y. Dotsey +21 more

Optimization of parasite DNA enrichment approaches to generate whole genome sequencing data for Plasmodium falciparum from low-parasitemia samples

Research Square(2020)10.21203/rs.2.17581/v2

N/A

0DataRank · unranked

0 citations

Matthew Adams, Kara A. Moser, Biraj Shrestha, Emily M. Stucke, Miriam K. Laufer +4 more

Distribution and Temporal Dynamics of Plasmodium falciparum Chloroquine Resistance Transporter Mutations Associated With Piperaquine Resistance in Northern Cambodia

The Journal of Infectious Diseases(2021)10.1093/infdis/jiab055

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0DataRank · unranked

20 citations

Zalak Shah, Andrew P. Morgan, Piyaporn Saingam, Chaiyaporn Chaisatit, Suwanna Chaorattanakawee +24 more

Whole-genome analysis of Malawian Plasmodium falciparum isolates identifies possible targets of allele-specific immunity to clinical malaria

PLoS Genetics(2021)10.1371/journal.pgen.1009576

N/A

0DataRank · unranked

17 citations

Myo Naung, Kara A. Moser, Matthew Adams, Andrea G. Buchwald, Ankit Dwivedi +9 more

Understanding the Intransigence of Malaria in Malawi

American Journal of Tropical Medicine and Hygiene(2022)10.4269/ajtmh.21-1263

N/A

0DataRank · unranked

28 citations

Jessy Goupeyou-Youmsi, Karl B. Seydel, Charles Mangani, Peter Austin Morton Ntenda, Alick Sixpence +11 more

An In Silico Analysis of Malaria Pre-Erythrocytic-Stage Antigens Interpreting Worldwide Genetic Data to Suggest Vaccine Candidate Variants and Epitopes

Microorganisms(2022)10.3390/microorganisms10061090

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0DataRank · unranked

10 citations

Ankit Dwivedi, Matthew Adams, Amadou Niangaly, Matthew B. Laurens, Myaing M. Nyunt +5 more

STRIDE: a command-line HMM-based identifier and sub-classifier of Plasmodium falciparum RIFIN and STEVOR variant surface antigen families

BMC Bioinformatics(2022)10.1186/s12859-021-04515-8

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0DataRank · unranked

2 citations

Zalak Shah, Katie R. Bradwell, James B. Munro, Andrea A. Berry, David Serre +5 more

Malian children infected with Plasmodium ovale and Plasmodium falciparum display very similar gene expression profiles

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.09.09.507248

N/A

0DataRank · unranked

0 citations

Salif Yirampo, Drissa Coulibaly, Abdoulaye K. Koné, Matthew B. Laurens, Emily M. Stucke +14 more