X. Shirley Liu

Ministry of Education of the People's Republic of China

Also affiliated with Jishou University, Harbin Medical University, Hebei University of Technology, Chinese Academy of Medical Sciences & Peking Union Medical College, Second Affiliated Hospital of Harbin Medical University, Nanjing Medical University

MedicineBiochemistry, Genetics and Molecular BiologyImmunology and Microbiology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

14.8Author DataRank

Indexed papers

8in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 8 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Expanded encyclopaedias of DNA elements in the human and mouse genomes

Nature(2020)10.1038/s41586-020-2493-4

Top 3%

6.4DataRank

Top 3%2615 citations

Federico Abascal, Reyes Acosta, Nicholas J. Addleman, Jessika Adrian, Veena Afzal +501 more

Papers

Driven by 53 papers — median percentile 41. Top paper: “Expanded encyclopaedias of DNA elements in the human and mouse genomes”.

Expanded encyclopaedias of DNA elements in the human and mouse genomes

Nature(2020)10.1038/s41586-020-2493-4

Top 3%

6.4DataRank

Top 3%2615 citations

Federico Abascal, Reyes Acosta, Nicholas J. Addleman, Jessika Adrian, Veena Afzal +501 more

Dynamic incorporation of multiple in silico functional annotations empowers rare variant association analysis of large whole-genome sequencing studies at scale

Nature Genetics(2020)10.1038/s41588-020-0676-4

N/A

5.3DataRank · unranked

295 citations

Zilin Li, Hufeng Zhou, Sheila M. Gaynor, Yaowu Liu, Han Chen +88 more

An integrative ENCODE resource for cancer genomics

Nature Communications(2020)10.1038/s41467-020-14743-w

Top 5%

4.1DataRank

Top 5%190 citations

Donghoon Lee, Vineet K. Dhiman, Peng Jiang, Jie Xu, Patrick D. McGillivray +53 more

Fast alignment and preprocessing of chromatin profiles with Chromap

Nature Communications(2021)10.1038/s41467-021-26865-w

N/A

4.0DataRank · unranked

200 citations

Li Song, Xiaotao Wang, Haoyu Cheng, Chenfei Wang, Clifford A. Meyer +7 more

TISMO: syngeneic mouse tumor database to model tumor immunity and immunotherapy response

Nucleic Acids Research(2021)10.1093/nar/gkab804

Top 7%

3.1DataRank

Top 7%135 citations

Cheryl J. Wong, Lin Yang, Nofal Ouardaoui, Dian Li, Wubing Zhang +15 more

Subtype heterogeneity and epigenetic convergence in neuroendocrine prostate cancer

Nature Communications(2021)10.1038/s41467-021-26042-z

N/A

2.9DataRank · unranked

163 citations

Yingtian Xie, Alba Font‐Tello, Klothilda Lim, Sudeepa Syamala, Xintao Qiu +33 more

Inhibition of MAN2A1 Enhances the Immune Response to Anti–PD-L1 in Human Tumors

Clinical Cancer Research(2020)10.1158/1078-0432.ccr-20-0778

N/A

2.1DataRank · unranked

56 citations

Shengqing Gu, Tong Han, Wubing Zhang, Lei Huang, Ziyi Li +9 more

Model-based Analysis of ChIP-Seq (MACS)

Genome Biology(2008)10.1186/gb-2008-9-9-r137

N/A

1.5DataRank · unranked

19654 citations

Tao Liu, Clifford A. Meyer, Jérôme Eeckhoute, David S. Johnson, Louis Philip Benoit Bouvrette +7 more

TIMER: A Web Server for Comprehensive Analysis of Tumor-Infiltrating Immune Cells

Cancer Research(2017)10.1158/0008-5472.can-17-0307

N/A

1.3DataRank · unranked

6536 citations

Jingyu Fan, Binbin Wang, Nicole Traugh, Qianming Chen, Jialiang Yang +4 more

TIMER2.0 for analysis of tumor-infiltrating immune cells

Nucleic Acids Research(2020)10.1093/nar/gkaa407

N/A

1.3DataRank · unranked

5752 citations

Jingxin Fu, Zexian Zeng, David Cohen, Jing Li, Qianming Chen +3 more

Comprehensive Characterizations of Immune Receptor Repertoire in Tumors and Cancer Immunotherapy Studies

Cancer Immunology Research(2022)10.1158/2326-6066.cir-21-0965

Top 17%

1.2DataRank

Top 17%29 citations

Zhangyi Ouyang, David Cohen, Yang Cao, Jennifer Altreuter, Gali Bai +7 more

ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia

Genome Research(2012)10.1101/gr.136184.111

N/A

1.2DataRank · unranked

2212 citations

Georgi K. Marinov, Anshul Kundaje, Yanxiao Zhang, Florencia Pauli, Serafim Batzoglou +46 more

Transfer learning enables predictions in network biology

Nature(2023)10.1038/s41586-023-06139-9

N/A

1.1DataRank · unranked

1104 citations

Ling Xiao, Anant Chopra, Mark Chaffin, Zeina R. Al Sayed, Matthew C. Hill +6 more

A Circadian Rhythm Orchestrated by Histone Deacetylase 3 Controls Hepatic Lipid Metabolism

Science(2011)10.1126/science.1198125

N/A

0.978DataRank · unranked

676 citations

Tao Liu, Zheng Sun, Anne Bugge, Shannon E. Mullican, Theresa Alenghat +3 more

Inhibitory CD161 receptor identified in glioma-infiltrating T cells by single-cell analysis

Cell(2021)10.1016/j.cell.2021.01.022

N/A

0.897DataRank · unranked

394 citations

Orr Ashenberg, Itay Tirosh, Simon Gritsch, Elizabeth M. Perez, Sascha Marx +38 more

Chromatin signature of embryonic pluripotency is established during genome activation

Nature(2010)10.1038/nature08866

N/A

0.891DataRank · unranked

379 citations

Yong Zhang, Ian G. Woods, Farhad Imam, Prisca Liberali, X. Shirley Liu +4 more

TRUST4: immune repertoire reconstruction from bulk and single-cell RNA-seq data

Nature Methods(2021)10.1038/s41592-021-01142-2

N/A

0.885DataRank · unranked

363 citations

David Cohen, Zhangyi Ouyang, Yang Cao, Xihao Hu, X. Shirley Liu +1 more

Lisa: inferring transcriptional regulators through integrative modeling of public chromatin accessibility and ChIP-seq data

Genome biology(2020)10.1186/s13059-020-1934-6

N/A

0.867DataRank · unranked

323 citations

Jing‐Yu Fan, Rongbin Zheng, Changxin Wan, Shenglin Mei, Qiu Wu +6 more

Therapeutically Increasing MHC-I Expression Potentiates Immune Checkpoint Blockade

Cancer Discovery(2021)10.1158/2159-8290.cd-20-0812

N/A

0.848DataRank · unranked

284 citations

Wubing Zhang, Xiaoqing Wang, Peng Jiang, Nicole Traugh, Ziyi Li +28 more

Immunostimulatory Cancer-Associated Fibroblast Subpopulations Can Predict Immunotherapy Response in Head and Neck Cancer

Clinical Cancer Research(2022)10.1158/1078-0432.ccr-21-3570

N/A

0.806DataRank · unranked

215 citations

Diana Graves, Michael Korrer, Yu Wang, Sohini Roy, Abdullah Naveed +13 more

Integrin αvβ6–TGFβ–SOX4 Pathway Drives Immune Evasion in Triple-Negative Breast Cancer

Cancer Cell(2020)10.1016/j.ccell.2020.12.001

N/A

0.804DataRank · unranked

212 citations

Sushil Kumar, Peng Jiang, Jason W. Pyrdol, Angela E. Zou, Anže Godicelj +11 more

In vivo CRISPR screens identify the E3 ligase Cop1 as a modulator of macrophage infiltration and cancer immunotherapy target

Cell(2021)10.1016/j.cell.2021.09.006

N/A

0.795DataRank · unranked

199 citations

Collin Tokheim, Shengqing Gu, Binbin Wang, Qin Tang, Yihao Li +17 more

MYC drives aggressive prostate cancer by disrupting transcriptional pause release at androgen receptor targets

Nature Communications(2022)10.1038/s41467-022-30257-z

N/A

0.762DataRank · unranked

160 citations

Nadia Boufaied, Tarek Hallal, Avery Feit, Anna de Polo, Adrienne Luoma +30 more

Determinants of transcription factor regulatory range

Nature Communications(2020)10.1038/s41467-020-16106-x

N/A

0.681DataRank · unranked

93 citations

Rongbin Zheng, Collin Tokheim, Xin Dong, Jing‐Yu Fan, Changxin Wan +6 more

Fast alignment and preprocessing of chromatin profiles with Chromap

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.06.18.448995

N/A

0.679DataRank · unranked

14 citations

Li Song, Xiaotao Wang, Haoyu Cheng, Chenfei Wang, Clifford A. Meyer +7 more

Systematic characterization of mutations altering protein degradation in human cancers

Molecular Cell(2021)10.1016/j.molcel.2021.01.020

N/A

0.673DataRank · unranked

88 citations

Xiaoqing Wang, Richard T. Timms, Boning Zhang, Elijah L. Mena, Binbin Wang +8 more

A Molecular Switch between Mammalian MLL Complexes Dictates Response to Menin–MLL Inhibition

Cancer Discovery(2022)10.1158/2159-8290.cd-22-0416

N/A

0.668DataRank · unranked

85 citations

Francisco J. Sánchez‐Rivera, Florian Perner, Douglas Barrows, Edward R. Kastenhuber, Yu-Jui Ho +17 more

Mammalian SWI/SNF Complex Genomic Alterations and Immune Checkpoint Blockade in Solid Tumors

Cancer Immunology Research(2020)10.1158/2326-6066.cir-19-0866

N/A

0.657DataRank · unranked

79 citations

Amin H. Nassar, Wanling Xie, Ziad Bakouny, Jacob E. Berchuck, David A. Braun +27 more

Machine Learning Modeling of Protein-Intrinsic Features Predicts Tractability of Targeted Protein Degradation

Genomics Proteomics & Bioinformatics(2022)10.1016/j.gpb.2022.11.008

N/A

0.593DataRank · unranked

51 citations

Shourya S. Roy Burman, Jiaye Chen, Katherine A. Donovan, Yang Cao, Chelsea Shu +9 more

Clonal tracing reveals diverse patterns of response to immune checkpoint blockade

Genome biology(2020)10.1186/s13059-020-02166-1

N/A

0.524DataRank · unranked

32 citations

Xiaoqing Wang, Xihao Hu, Peng Jiang, Ziyi Li, Nicole Traugh +21 more

Systematic evaluation of factors influencing ChIP-seq fidelity

UNC Libraries(2020)10.17615/zfrj-2627

N/A

0.483DataRank · unranked

9 citations

Kevin P. White, Barbara Wold, Peter J. Bickel, Yijun Ruan, Tao Liu +12 more

Robust identification of perturbed cell types in single-cell RNA-seq data

Nature Communications(2024)10.1038/s41467-024-51649-3

N/A

0.470DataRank · unranked

22 citations

Danielle Paulson, Gege Qian, X. Shirley Liu, Rafael A. Irizarry, Avinash Sahu +1 more

Hippo Signaling Pathway Regulates Cancer Cell–Intrinsic MHC-II Expression

Cancer Immunology Research(2022)10.1158/2326-6066.cir-22-0227

N/A

0.470DataRank · unranked

22 citations

Shengqing Gu, Nofal Ouardaoui, Carly Tymm, Lin Yang, Cheryl J. Wong +9 more

Addressing Tumor Heterogeneity by Sensitizing Resistant Cancer Cells to T cell–Secreted Cytokines

Cancer Discovery(2023)10.1158/2159-8290.cd-22-1125

N/A

0.464DataRank · unranked

21 citations

Deng Pan, Wubing Zhang, Xixi Zhang, Tiffany Y. Juan, Jason W. Pyrdol +5 more

Subtype Heterogeneity and Epigenetic Convergence in Neuroendocrine Prostate Cancer

(2020)10.1101/2020.09.13.291328

N/A

0.464DataRank · unranked

21 citations

Yingtian Xie, Alba Font‐Tello, Klothilda Lim, Sudeepa Syamala, Xintao Qiu +30 more

Machine learning modeling of protein-intrinsic features predicts tractability of targeted protein degradation

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.09.27.462040

N/A

0.430DataRank · unranked

5 citations

Shourya S. Roy Burman, Jiaye Chen, Katherine A. Donovan, Yang Cao, Boning Zhang +7 more

T1K: efficient and accurate KIR and HLA genotyping with next-generation sequencing data

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.10.26.513955

N/A

0.397DataRank · unranked

6 citations

Gali Bai, X. Shirley Liu, Bo Li, Alexandra P. Lewis, Li Song

In Vivo CRISPR Screens Identify E3 Ligase Cop1 as a Modulator of Macrophage Infiltration and Cancer Immunotherapy Target

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.12.09.418012

N/A

0.104DataRank · unranked

1 citations

Collin Tokheim, Binbin Wang, Shengqing Gu, Qin Tang, Yihao Li +16 more

700 Increasing MHC-I expression to potentiate immune checkpoint blockade therapy

Regular and Young Investigator Award Abstracts(2021)10.1136/jitc-2021-sitc2021.700

N/A

0.104DataRank · unranked

1 citations

Wubing Zhang, Xiaoqing Wang, Peng Jiang, Nicole Traugh, Ziyi Li +28 more

XBP1 promotes triple-negative breast cancer by controlling the HIF1α pathway

UNC Libraries(2020)10.17615/qv76-mh95

N/A

0.104DataRank · unranked

1 citations

Wai Leong Tam, X. Shirley Liu, Sandra J. Shin, Myles Brown, Jenny C. Chang +19 more

Data from Comprehensive Characterizations of Immune Receptor Repertoire in Tumors and Cancer Immunotherapy Studies

(2023)10.1158/2326-6066.c.6550716.v1

Top 100%

0DataRank

Top 100%0 citations

Zhangyi Ouyang, David Cohen, Yang Cao, Jennifer Altreuter, Gali Bai +7 more

Nature 10_922.pdf

Harvard Dataverse(2010)10.7910/dvn/qfw3x3/uwaw3g

N/A

0DataRank · unranked

0 citations

Yong Zhang, Ian G. Woods, Farhad Imam, Prisca Liberali, X. Shirley Liu +2 more

Immune repertoires of de-identified TCGA tumor samples assembled by TRUST4

Zenodo (CERN European Organization for Nuclear Research)(2022)10.5281/zenodo.6326136

Top 100%

0DataRank

Top 100%0 citations

Zhangyi Ouyang, David Cohen, Yang Cao, Jennifer Altreuter, Gali Bai +7 more

Chromatin Signature of Embryonic Pluripotency is Established During Genome Activation

Harvard Dataverse(2010)10.7910/dvn/qfw3x3

N/A

0DataRank · unranked

0 citations

Yong Zhang, Ian G. Woods, Farhad Imam, Prisca Liberali, X. Shirley Liu +2 more

Efficient and accurate KIR and HLA genotyping with massively parallel sequencing data

Genome Research(2023)10.1101/gr.277585.122

N/A

0DataRank · unranked

52 citations

Gali Bai, X. Shirley Liu, Bo Li, Heng Li, Li Song

Robust identification of perturbed cell types in single-cell RNA-seq data

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.05.06.539326

N/A

0DataRank · unranked

4 citations

Danielle Paulson, Gege Qian, X. Shirley Liu, Rafael A. Irizarry, Avinash Sahu +1 more

Nucleosome dynamics define transcriptional enhancers

UNC Libraries(2020)10.17615/4sp1-g908

N/A

0DataRank · unranked

2 citations

Mathieu Lupien, Kexin Xu, Jason D. Lieb, Min Ni, Shannon T. Bailey +10 more

Computational Approaches to Modeling Transcription Factor Activity and Gene Regulation

Trends in Biochemical Sciences(2020)10.1016/j.tibs.2020.09.005

N/A

0DataRank · unranked

1 citations

X. Shirley Liu, Clifford A. Meyer

Loss of H3K36 Methyltransferase SETD2 Impairs V(D)J Recombination during Lymphoid Development

iScience(2020)10.1016/j.isci.2020.100941

N/A

0DataRank · unranked

15 citations

Jonathan Chabon, Chloe Matovina, Janna Minehart, Bo-Ruei Chen, Jian Zhang +12 more

Immune repertoires of de-identified TCGA tumor samples assembled by TRUST4

Zenodo (CERN European Organization for Nuclear Research)(2024)10.5281/zenodo.6326135

Top 100%

0DataRank

Top 100%0 citations

Zhangyi Ouyang, David Cohen, Yang Cao, Jennifer Altreuter, Gali Bai +7 more

CHIPS: A Snakemake pipeline for quality control and reproducible processing of chromatin profiling data

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.03.09.434676

N/A

0DataRank · unranked

0 citations

Clara C. Cousins, Gali Bai, Paloma Cejas, Xintao Qiu, Zachary T. Herbert +6 more

Data from Comprehensive Characterizations of Immune Receptor Repertoire in Tumors and Cancer Immunotherapy Studies

(2023)10.1158/2326-6066.c.6550716

Top 100%

0DataRank

Top 100%0 citations

Zhangyi Ouyang, David Cohen, Yang Cao, Jennifer Altreuter, Gali Bai +7 more

Supplementary Figure from Comprehensive Characterizations of Immune Receptor Repertoire in Tumors and Cancer Immunotherapy Studies

(2023)10.1158/2326-6066.22544670

N/A

0DataRank · unranked

0 citations

Zhangyi Ouyang, David Cohen, Yang Cao, Jennifer Altreuter, Gali Bai +7 more

X. Shirley Liu

Indexed papers

Top data-sharing exemplar

Papers