Daniel Segrè

ORCID: 0000-0003-4859-1914

Also affiliated with University of Massachusetts Boston

Biochemistry, Genetics and Molecular BiologyEnvironmental Science

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 6%percentile

0.307Author DataRank

Indexed papers

1in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 1 indexed paper attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

A resource for the comparison and integration of heterogeneous microbiome networks

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.08.07.503059

Top 54%

0.307DataRank

Top 54%5 citations

Dileep Kishore, Yan Wang, Gabriel Bîrzu, Charles DeLisi, Kirill S. Korolev +2 more

Papers

Driven by 30 papers — median percentile 46. Top paper: “An evolutionary algorithm for designing microbial communities via environmental modification”.

An evolutionary algorithm for designing microbial communities via environmental modification

Journal of The Royal Society Interface(2021)10.1098/rsif.2021.0348

N/A

0.949DataRank · unranked

25 citations

Daniel Segrè, Alan R. Pacheco

animalcules: interactive microbiome analytics and visualization in R

Microbiome(2021)10.1186/s40168-021-01013-0

N/A

0.578DataRank · unranked

46 citations

Anthony Federico, Tyler Faits, Solaiappan Manimaran, Daniel Segrè, Stefano Monti +2 more

Nasopharyngeal Dysbiosis Precedes the Development of Lower Respiratory Tract Infections in Young Infants, a Longitudinal Infant Cohort Study

Gates Open Research(2024)10.12688/gatesopenres.13561.2

N/A

0.454DataRank · unranked

12 citations

Tyler Faits, Arshad Ismail, Mushal Allam, Zamantungwak Khumalo, William MacLeod +9 more

A resource for the comparison and integration of heterogeneous microbiome networks

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.08.07.503059

Top 54%

0.307DataRank

Top 54%5 citations

Dileep Kishore, Yan Wang, Gabriel Bîrzu, Charles DeLisi, Kirill S. Korolev +2 more

Non-additive microbial community responses to environmental complexity

Nature Communications(2021)10.1038/s41467-021-22426-3

N/A

0DataRank · unranked

91 citations

Melisa L. Osborne, Daniel Segrè, Alan R. Pacheco

Antagonistic epistasis of Hnf4α and FoxO1 metabolic networks through enhancer interactions in β-cell function

Molecular Metabolism(2021)10.1016/j.molmet.2021.101256

N/A

0DataRank · unranked

7 citations

Wen Du, Yasutaka Miyachi, Prasanna K. Dadi, David A. Jacobson, Daniel Segrè +2 more

Stoichiometric Modeling of Artificial String Chemistries Reveals Constraints on Metabolic Network Structure

Journal of Molecular Evolution(2021)10.1007/s00239-021-10018-0

N/A

0DataRank · unranked

4 citations

Alan R. Pacheco, David B. Bernstein, Daniel Segrè, Devlin C. Moyer

BowSaw: Inferring Higher-Order Trait Interactions Associated With Complex Biological Phenotypes

Frontiers in Molecular Biosciences(2021)10.3389/fmolb.2021.663532

N/A

0DataRank · unranked

2 citations

Mark Kon, Daniel Segrè, Demetrius DiMucci

Nasopharyngeal Dysbiosis Precedes the Development of Lower Respiratory Tract Infections in Young Infants, a Longitudinal Infant Cohort Study

medRxiv(2021)10.1101/2021.10.13.21264939

N/A

0DataRank · unranked

8 citations

Tyler Faits, Arshad Ismail, Mushal Allam, Zamantungwak Khumalo, William MacLeod +9 more

A co-culture microplate for real-time measurement of microbial interactions

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.01.07.425753

N/A

0DataRank · unranked

4 citations

David B. Bernstein, Natalie Vaisman, Horácio M. Frydman, Daniel Segrè, Charles Jo

Optimality of extracellular enzyme production and activity in dynamic flux balance modeling

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.11.01.466736

N/A

0DataRank · unranked

4 citations

Ilija Dukovski, Jennifer Bhatnagar, Daniel Segrè, Michael Quintin

Toward FAIR Representations of Microbial Interactions

mSystems(2022)10.1128/msystems.00659-22

N/A

0DataRank · unranked

18 citations

Charlie Pauvert, Dileep Kishore, Daniel Segrè, Alan R. Pacheco

Protein cost minimization promotes the emergence of coenzyme redundancy

Proceedings of the National Academy of Sciences(2022)10.1073/pnas.2110787119

N/A

0DataRank · unranked

12 citations

Ashish B. George, Avi I. Flamholz, Daniel Segrè, Joshua E. Goldford

Nasopharyngeal Dysbiosis Precedes the Development of Lower Respiratory Tract Infections in Young Infants, a Longitudinal Infant Cohort Study

Gates Open Research(2022)10.12688/gatesopenres.13561.1

N/A

0DataRank · unranked

4 citations

Tyler Faits, Arshad Ismail, Mushal Allam, Zamantungwak Khumalo, William MacLeod +9 more

Growth instabilities shape morphology and genetic diversity of cellular aggregates

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.03.28.486080

N/A

0DataRank · unranked

0 citations

Ilija Dukovski, Daniel Segrè, Kirill S. Korolev, Alexander Golden

Unlocking the magic in mycelium: Using synthetic biology to optimize filamentous fungi for biomanufacturing and sustainability

Materials Today Bio(2023)10.1016/j.mtbio.2023.100560

N/A

0DataRank · unranked

95 citations

Jing Zhang, Jenny M. Tam, George M. Church, Ahmad S. Khalil, Daniel Segrè +2 more

Environmental microbiome engineering for the mitigation of climate change

Global Change Biology(2023)10.1111/gcb.16609

N/A

0DataRank · unranked

82 citations

Daniel Segrè, Jennifer Bhatnagar, Michael Silverstein

Inferring microbial co-occurrence networks from amplicon data: a systematic evaluation

mSystems(2023)10.1128/msystems.00961-22

N/A

0DataRank · unranked

24 citations

Gabriel Bîrzu, Zhenjun Hu, Charles DeLisi, Kirill S. Korolev, Daniel Segrè +1 more

Construction and Modeling of a Coculture Microplate for Real-Time Measurement of Microbial Interactions

mSystems(2023)10.1128/msystems.00017-21

N/A

0DataRank · unranked

22 citations

David B. Bernstein, Natalie Vaisman, Horácio M. Frydman, Daniel Segrè, Charles Jo

Metabolic complexity drives divergence in microbial communities

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.08.03.551516

N/A

0DataRank · unranked

2 citations

Jennifer Bhatnagar, Daniel Segrè, Michael Silverstein

Multi-Attribute Subset Selection enables prediction of representative phenotypes across microbial populations

Communications Biology(2024)10.1038/s42003-024-06093-w

N/A

0DataRank · unranked

3 citations

Taiyao Wang, Elena Forchielli, Meghan Thommes, Ioannis Ch. Paschalidis, Daniel Segrè +1 more

Biophysical metabolic modeling of complex bacterial colony morphology

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.03.13.584915

N/A

0DataRank · unranked

2 citations

Lauren Golden, Jing Zhang, Melisa L. Osborne, Daniel Segrè, Kirill S. Korolev +1 more

Semi-Automatic Detection of Errors in Genome-Scale Metabolic Models

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.06.24.600481

N/A

0DataRank · unranked

1 citations

Justin Reimertz, Daniel Segrè, Juan I. Fuxman Bass, Devlin C. Moyer

Biophysical metabolic modeling of complex bacterial colony morphology

Cell Systems(2025)10.1016/j.cels.2025.101352

N/A

0DataRank · unranked

6 citations

Lauren Golden, Jing Zhang, Melisa L. Osborne, Daniel Segrè, Kirill S. Korolev +1 more

Flux sampling and context-specific genome-scale metabolic models for biotechnological applications

Trends in biotechnology(2025)10.1016/j.tibtech.2025.07.010

N/A

0DataRank · unranked

3 citations

Justin Reimertz, Juan I. Fuxman Bass, Daniel Segrè, Devlin C. Moyer

Inferring microbial co-occurrence networks from amplicon data: a systematic evaluation

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.09.23.309781

N/A

0DataRank · unranked

5 citations

Gabriel Bîrzu, Zhenjun Hu, Charles DeLisi, Kirill S. Korolev, Daniel Segrè +1 more

Integrative analysis across metagenomic taxonomic classifiers: A case study of the gut microbiome in aging and longevity

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.05.14.654104

N/A

0DataRank · unranked

0 citations

Ye Chen, Sarah Bald, A. Tai, Sofiya Milman, Stacy L. Andersen +5 more

Stoichiometric modeling of artificial string chemistries

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.09.16.300491

N/A

0DataRank · unranked

2 citations

Alan R. Pacheco, David B. Bernstein, Daniel Segrè, Devlin C. Moyer

animalcules: Interactive Microbiome Analytics and Visualization in R

Research Square(2020)10.21203/rs.3.rs-29649/v2

N/A

0DataRank · unranked

0 citations

Anthony Federico, Solaiappan Manimaran, Daniel Segrè, Stefano Monti, W. Evan Johnson +1 more

A metabolic modeling platform for the computation of microbial ecosystems in time and space (COMETS)

Nature Protocols(2021)10.1038/s41596-021-00593-3

N/A

0DataRank · unranked

207 citations

Djordje Bajić, Jeremy M. Chacón, Michael Quintin, Jean C. C. Vila, Snorre Sulheim +8 more

Daniel Segrè

Indexed papers

Top data-sharing exemplar

Papers