🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Jesse Farek

Baylor College of Medicine

ORCID: 0000-0003-4939-8083

Also affiliated with Baylor Genetics

Biochemistry, Genetics and Molecular BiologyMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile
9.1Author DataRank

Indexed papers

4in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology
Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 4 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Top data-sharing exemplar

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Benchmarking challenging small variants with linked and long reads

Cell Genomics(2022)10.1016/j.xgen.2022.100128
Top 4%
4.9DataRank
Top 4%212 citations

Nathan D. Olson, Lindsay Harris, Ziad Khan, Jesse Farek, Medhat Mahmoud +36 more

Papers

Driven by 8 papers — median percentile 89. Top paper: “Benchmarking challenging small variants with linked and long reads”.

Benchmarking challenging small variants with linked and long reads

Cell Genomics(2022)10.1016/j.xgen.2022.100128
Top 4%
4.9DataRank
Top 4%212 citations

Nathan D. Olson, Lindsay Harris, Ziad Khan, Jesse Farek, Medhat Mahmoud +36 more

Benchmarking challenging small variants with linked and long reads

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.07.24.212712
Top 11%
2.0DataRank
Top 11%60 citations

Nathan D. Olson, Lindsay Harris, Jennifer McDaniel, Ziad Khan, Jesse Farek +37 more

A diploid assembly-based benchmark for variants in the major histocompatibility complex

Nature Communications(2020)10.1038/s41467-020-18564-9
Top 11%
2.0DataRank
Top 11%102 citations

Justin Wagner, Qiandong Zeng, Erik Garrison, Shilpa Garg, Arkarachai Fungtammasan +21 more

FixItFelix: improving genomic analysis by fixing reference errors

Genome biology(2023)10.1186/s13059-023-02863-7
N/A
0.500DataRank · unranked
27 citations

Jonathon LeFaive, Peter Orchard, Medhat Mahmoud, Luis F. Paulin, Jesse Farek +7 more

Fixing reference errors efficiently improves sequencing results

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.07.18.500506
Top 65%
0.208DataRank
Top 65%3 citations

Jonathon LeFaive, Peter Orchard, Medhat Mahmoud, Luis F. Paulin, Jesse Farek +7 more

Exome variant discrepancies due to reference-genome differences

The American Journal of Human Genetics(2021)10.1016/j.ajhg.2021.05.011
N/A
0DataRank · unranked
66 citations

Moez Dawood, Michael M. Khayat, Jesse Farek, Shalini N. Jhangiani, Ziad Khan +8 more

Celeste : A cloud-based genomics infrastructure with variant-calling pipeline suited for population-scale sequencing projects

medRxiv(2025)10.1101/2025.04.29.25326690
N/A
0DataRank · unranked
0 citations

Breanna Lee, Victoria Yi, Jesse Farek, Ziad Khan, Sara E. Kalla +12 more

Constellation illuminates rare disease genetics

medRxiv(2025)10.1101/2025.10.15.25337675
N/A
0DataRank · unranked
0 citations

Qing Zhang, Xinchang Zheng, Shalini N. Jhangiani, Jacqueline Weir, Jesse Farek +15 more