Maulik Shukla

Also affiliated with University of Chicago

Biochemistry, Genetics and Molecular BiologyComputer ScienceMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

7.6Author DataRank

Indexed papers

3in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 3 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Introducing the Bacterial and Viral Bioinformatics Resource Center (BV-BRC): a resource combining PATRIC, IRD and ViPR

Nucleic Acids Research(2022)10.1093/nar/gkac1003

Top 4%

5.7DataRank

Top 4%1253 citations

Rida Assaf, Thomas Brettin, Neal Conrad, Clark Cucinell, James J. Davis +35 more

Papers

Driven by 20 papers — median percentile 86. Top paper: “Introducing the Bacterial and Viral Bioinformatics Resource Center (BV-BRC): a resource combining PATRIC, IRD and ViPR”.

Introducing the Bacterial and Viral Bioinformatics Resource Center (BV-BRC): a resource combining PATRIC, IRD and ViPR

Nucleic Acids Research(2022)10.1093/nar/gkac1003

Top 4%

5.7DataRank

Top 4%1253 citations

Rida Assaf, Thomas Brettin, Neal Conrad, Clark Cucinell, James J. Davis +35 more

Defining the risk of SARS-CoV-2 variants on immune protection

Nature(2022)10.1038/s41586-022-04690-5

N/A

4.9DataRank · unranked

185 citations

Elodie Ghedin, Matthew B. Frieman, Florian Krammer, Alba Grifoni, Arghavan Alisoltani +95 more

Analysis of the ARTIC version 3 and version 4 SARS-CoV-2 primers and their impact on the detection of the G142D amino acid substitution in the spike protein

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.09.27.461949

Top 14%

1.5DataRank

Top 14%19 citations

S. Wesley Long, Paul A. Christensen, Randall J. Olsen, Robert Olson, Maulik Shukla +4 more

Ensemble transfer learning for the prediction of anti-cancer drug response

Scientific Reports(2020)10.1038/s41598-020-74921-0

N/A

0.689DataRank · unranked

98 citations

Thomas Brettin, Yvonne A. Evrard, Alexander Partin, Fangfang Xia, Maulik Shukla +4 more

BV-BRC: a unified bacterial and viral bioinformatics resource with expanded functionality and AI integration

Nucleic Acids Research(2025)10.1093/nar/gkaf1254

Top 46%

0.396DataRank

Top 46%13 citations

Alice R. Wattam, Antonio Aleman, Roshni Bhattacharya, Nicole Bowers, Thomas Brettin +38 more

US National Institutes of Health Prioritization of SARS-CoV-2 Variants

Emerging infectious diseases(2023)10.3201/eid2905.221646

N/A

0.208DataRank · unranked

3 citations

Arghavan Alisoltani, Debbie Bratt, Liel Cohen-Lavi, Bethany L. Dearlove, Christian Drosten +29 more

A genomic data resource for predicting antimicrobial resistance from laboratory-derived antimicrobial susceptibility phenotypes

Briefings in Bioinformatics(2021)10.1093/bib/bbab313

N/A

0DataRank · unranked

40 citations

Marcus Nguyen, Derya Aytan-Aktug, Thomas Brettin, Emily Dietrich, Ronald W. Kenyon +12 more

Learning curves for drug response prediction in cancer cell lines

BMC Bioinformatics(2021)10.1186/s12859-021-04163-y

N/A

0DataRank · unranked

4 citations

Thomas Brettin, Yvonne A. Evrard, Yitan Zhu, Hyunseung Yoo, Fangfang Xia +7 more

A cross-study analysis of drug response prediction in cancer cell lines

Briefings in Bioinformatics(2021)10.1093/bib/bbab356

N/A

0DataRank · unranked

99 citations

Jonathan Allen, Prasanna Balaprakash, Thomas Brettin, Cristina García–Cardona, Austin Clyde +19 more

Converting tabular data into images for deep learning with convolutional neural networks

Scientific Reports(2021)10.1038/s41598-021-90923-y

N/A

0DataRank · unranked

198 citations

Thomas Brettin, Fangfang Xia, Alexander Partin, Maulik Shukla, Hyunseung Yoo +4 more

Enhanced Co-Expression Extrapolation (COXEN) Gene Selection Method for Building Anti-Cancer Drug Response Prediction Models

Genes(2020)10.3390/genes11091070

N/A

0DataRank · unranked

14 citations

Thomas Brettin, Yvonne A. Evrard, Fangfang Xia, Alexander Partin, Maulik Shukla +4 more

Early detection of emerging SARS-CoV-2 variants of interest for experimental evaluation

Frontiers in Bioinformatics(2022)10.3389/fbinf.2022.1020189

N/A

0DataRank · unranked

8 citations

James J. Davis, Anna Maria Niewiadomska, Robert Olson, Maulik Shukla, Rick Stevens +4 more

Early Detection of Emerging SARS-CoV-2 Variants of Interest for Experimental Evaluation

medRxiv(2022)10.1101/2022.08.08.22278553

N/A

0DataRank · unranked

4 citations

James J. Davis, Anna Maria Niewiadomska, Robert Olson, Maulik Shukla, Rick Stevens +4 more

Drug response prediction in patient-derived xenografts with data augmentation and multimodal deep learning.

Journal of Clinical Oncology(2022)10.1200/jco.2022.40.16_suppl.e13572

N/A

0DataRank · unranked

0 citations

Thomas Brettin, Yitan Zhu, Maulik Shukla, Fangfang Xia, Hyunseung Yoo +7 more

Data augmentation and multimodal learning for predicting drug response in patient-derived xenografts from gene expressions and histology images

Frontiers in Medicine(2023)10.3389/fmed.2023.1058919

N/A

0DataRank · unranked

13 citations

Thomas Brettin, Yitan Zhu, James M. Dolezal, Sara Kochanny, Alexander T. Pearson +5 more

Integration of Computational Docking into Anti-Cancer Drug Response Prediction Models

Cancers(2023)10.3390/cancers16010050

N/A

0DataRank · unranked

9 citations

Yitan Zhu, Thomas Brettin, Yvonne A. Evrard, Alexander Partin, Maulik Shukla +6 more

Data Imbalance in Drug Response Prediction - Multi-Objective Optimization Approach in Deep Learning Setting

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.03.14.585074

N/A

0DataRank · unranked

1 citations

Yitan Zhu, Thomas Brettin, Yvonne A. Evrard, Alexander Partin, Fangfang Xia +5 more

Defining the risk of SARS-CoV-2 variants on immune protection

UNC Libraries(2024)10.17615/ztqb-8n94

N/A

0DataRank · unranked

0 citations

Boritz E.A., Sinai Sacharen, VanBlargan L.A., Liebeskind M.J., Wei Wang +95 more

Analysis of the ARTIC Version 3 and Version 4 SARS-CoV-2 Primers and Their Impact on the Detection of the G142D Amino Acid Substitution in the Spike Protein

Microbiology Spectrum(2021)10.1128/spectrum.01803-21

N/A

0DataRank · unranked

66 citations

S. Wesley Long, Paul A. Christensen, Randall J. Olsen, Robert Olson, Maulik Shukla +4 more

Molecular Architecture of Early Dissemination and Massive Second Wave of the SARS-CoV-2 Virus in a Major Metropolitan Area

mBio(2020)10.1128/mbio.02707-20

N/A

0DataRank · unranked

141 citations

Randall J. Olsen, Paul A. Christensen, David W. Bernard, James J. Davis, Maulik Shukla +20 more

Maulik Shukla

Indexed papers

Top data-sharing exemplar

Papers