🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Cheng Ye

Vanderbilt University

ORCID: 0009-0003-1113-6990

Also affiliated with Zhoukou City Academy of Agricultural Sciences, Shanghai Construction Group (China)

Biochemistry, Genetics and Molecular BiologyImmunology and MicrobiologyMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile
0Author DataRank

Indexed papers

1in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology
Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 1 indexed paper attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Papers

Driven by 14 papers. Top paper: “matOptimize: a parallel tree optimization method enables online phylogenetics for SARS-CoV-2”.

matOptimize: a parallel tree optimization method enables online phylogenetics for SARS-CoV-2

Bioinformatics(2022)10.1093/bioinformatics/btac401
N/A
1.4DataRank · unranked
40 citations

Bryan Thornlow, Angie S. Hinrichs, Alexander Krämer, Cade Mirchandani, Devika Torvi +4 more

Online Phylogenetics with matOptimize Produces Equivalent Trees and is Dramatically More Efficient for Large SARS-CoV-2 Phylogenies than de novo and Maximum-Likelihood Implementations

Systematic Biology(2023)10.1093/sysbio/syad031
N/A
0.862DataRank · unranked
22 citations

Bryan Thornlow, Cheng Ye, Nicola De Maio, Jakob McBroome, Angie S. Hinrichs +4 more

Online Phylogenetics using Parsimony Produces Slightly Better Trees and is Dramatically More Efficient for Large SARS-CoV-2 Phylogenies than de novo and Maximum-Likelihood Approaches

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.12.02.471004
N/A
0.760DataRank · unranked
11 citations

Alexander Krämer, Cheng Ye, Nicola De Maio, Jakob McBroome, Angie S. Hinrichs +4 more

Pandemic-Scale Phylogenomics Reveals Elevated Recombination Rates in the SARS-CoV-2 Spike Region

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.08.04.455157
N/A
0.587DataRank · unranked
49 citations

Bryan Thornlow, Angie S. Hinrichs, Jakob McBroome, Nicolás Ayala, Cheng Ye +5 more

Prediction of Effectiveness and Toxicities of Immune Checkpoint Inhibitors Using Real-World Patient Data

JCO Clinical Cancer Informatics(2024)10.1200/cci.23.00207
N/A
0.500DataRank · unranked
27 citations

Kathleen F. Mittendorf, Zoltán Kiss, Michele L. Lenoue-Newton, Pablo Napan-Molina, Protiva Rahman +17 more

Objective Pharyngeal Phenotyping in Obstructive Sleep Apnea With High‐Resolution Manometry

Otolaryngology(2023)10.1002/ohn.257
N/A
0.452DataRank · unranked
6 citations

William C. Scott, Cheng Ye, Daniel Fabbri, David T. Kent

Genos: a human-centric genomic foundation model

GigaScience(2025)10.1093/gigascience/giaf132
N/A
0.360DataRank · unranked
10 citations

Bin Xie, Cheng Ye, Cheng Wang, Duoyuan Chen, Ercheng Wang +57 more

Pandemic-scale phylogenomics reveals the SARS-CoV-2 recombination landscape

Nature(2022)10.1038/s41586-022-05189-9
N/A
0DataRank · unranked
163 citations

Bryan Thornlow, Angie S. Hinrichs, Jakob McBroome, Nicolás Ayala, Cheng Ye +6 more

EVALUATION OF CRITICAL EXPERIMENTS IN THE UNIVERSITY OF WISCONSIN NUCLEAR REACTOR (UWNR) WITH UNCERTAINTY QUANTIFICATION

EPJ Web of Conferences(2021)10.1051/epjconf/202124710032
N/A
0DataRank · unranked
0 citations

Cheng Ye, Rabab Elzohery, Paul Wilson, Jeremy A. Roberts, Mark DeHart +1 more

Deletion of Vβ3 + CD4 + T cells by endogenous mouse mammary tumor virus 3 prevents type 1 diabetes induction by autoreactive CD8 + T cells

Proceedings of the National Academy of Sciences(2023)10.1073/pnas.2312039120
N/A
0DataRank · unranked
4 citations

Sadie Clements, Weihong Gu, Aron M. Geurts, Clayton E. Mathews, David Serreze +3 more

Pandemic-scale phylogenetics

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.12.03.470766
N/A
0DataRank · unranked
6 citations

Bryan Thornlow, Alexander Krämer, Jakob McBroome, Angie S. Hinrichs, Russell Corbett‐Detig +2 more

Exploring a learning-to-rank approach to enhance the Retrieval Augmented Generation (RAG)-based electronic medical records search engines

Informatics and Health(2024)10.1016/j.infoh.2024.07.001
N/A
0DataRank · unranked
10 citations

Cheng Ye

Next generation of electronic medical record search engines to support chart reviews: A systematic user study and future research direction

Journal of Economy and Technology(2024)10.1016/j.ject.2024.03.003
N/A
0DataRank · unranked
1 citations

Daniel Fabbri, Cheng Ye

CD70 Inversely Regulates Regulatory T Cells and Invariant NKT Cells and Modulates Type 1 Diabetes in NOD Mice

The Journal of Immunology(2020)10.4049/jimmunol.2000148
N/A
0DataRank · unranked
11 citations

Benjamin E. Low, Michael V. Wiles, Todd M. Brusko, David Serreze, John P. Driver +1 more