🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Justin Wagner

National Institute of Standards and Technology

ORCID: 0009-0003-8903-0504

Also affiliated with Organisation internationale de police criminelle, Material Measurement Laboratory

Biochemistry, Genetics and Molecular BiologyAgricultural and Biological Sciences

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile
20.1Author DataRank

Indexed papers

12in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology
Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 12 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Top data-sharing exemplar

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Benchmarking challenging small variants with linked and long reads

Cell Genomics(2022)10.1016/j.xgen.2022.100128
Top 4%
4.9DataRank
Top 4%212 citations

Nathan D. Olson, Lindsay Harris, Ziad Khan, Jesse Farek, Medhat Mahmoud +36 more

Papers

Driven by 22 papers — median percentile 79. Top paper: “Benchmarking challenging small variants with linked and long reads”.

Benchmarking challenging small variants with linked and long reads

Cell Genomics(2022)10.1016/j.xgen.2022.100128
Top 4%
4.9DataRank
Top 4%212 citations

Nathan D. Olson, Lindsay Harris, Ziad Khan, Jesse Farek, Medhat Mahmoud +36 more

A complete reference genome improves analysis of human genetic variation

Science(2022)10.1126/science.abl3533
Top 5%
4.4DataRank
Top 5%437 citations

Stephanie M. Yan, Daniela C. Soto, Melanie Kirsche, Samantha Zarate, Pavel Avdeyev +28 more

Assembly and annotation of an Ashkenazi human reference genome

Genome biology(2020)10.1186/s13059-020-02047-7
Top 10%
2.2DataRank
Top 10%70 citations

Aleksey V. Zimin, Rachel M. Sherman, Daniela Puiu, Justin Wagner, Nathan D. Olson +5 more

Benchmarking challenging small variants with linked and long reads

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.07.24.212712
Top 11%
2.0DataRank
Top 11%60 citations

Nathan D. Olson, Lindsay Harris, Jennifer McDaniel, Ziad Khan, Jesse Farek +37 more

A diploid assembly-based benchmark for variants in the major histocompatibility complex

Nature Communications(2020)10.1038/s41467-020-18564-9
Top 11%
2.0DataRank
Top 11%102 citations

Justin Wagner, Qiandong Zeng, Erik Garrison, Shilpa Garg, Arkarachai Fungtammasan +21 more

precisionFDA Truth Challenge V2: Calling variants from short- and long-reads in difficult-to-map regions

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.11.13.380741
Top 11%
2.0DataRank
Top 11%67 citations

Justin Wagner, Jennifer McDaniel, Sarah H. Stephens, Samuel T. Westreich, Anish G. Prasanna +68 more

A complete diploid human genome benchmark for personalized genomics

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.09.21.677443
Top 32%
0.611DataRank
Top 32%23 citations

Nathan Dwarshuis, Hyun Joo Ji, Arang Rhie, Hailey Loucks, Glennis A. Logsdon +60 more

Assembly and Annotation of an Ashkenazi Human Reference Genome

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.03.18.997395
Top 33%
0.593DataRank
Top 33%9 citations

Aleksey V. Zimin, Rachel M. Sherman, Daniela Puiu, Justin Wagner, Nathan D. Olson +5 more

A strategy for building and using a human reference pangenome

F1000Research(2021)10.12688/f1000research.19630.2
N/A
0.533DataRank · unranked
10 citations

Giuseppe Narzisi, Valérie Schneider, Peter A. Audano, Evan Biederstedt, Lon Blauvelt +35 more

Development and extensive sequencing of a broadly-consented Genome in a Bottle matched tumor-normal pair

Scientific Data(2025)10.1038/s41597-025-05438-2
Top 44%
0.421DataRank
Top 44%10 citations

Vaidehi Patel, Nathan D. Olson, Hua‐Jun He, Anthony Schmitt, Kenneth D. Cole +80 more

Unraveling the hidden complexity of cancer through long-read sequencing

Genome Research(2025)10.1101/gr.280041.124
N/A
0.360DataRank · unranked
10 citations

Ayse G. Keskus, Justin Wagner, Michal Izydorczyk, Winston Timp, Fritz J. Sedlazeck +5 more

Pan-conserved segment tags identify ultra-conserved sequences across assemblies in the human pangenome

Cell Reports Methods(2023)10.1016/j.crmeth.2023.100543
Top 50%
0.352DataRank
Top 50%6 citations

Stephanie Greer, Dmitri S. Pavlichin, Bo Zhou, Alexander E. Urban, Tsachy Weissman +94 more

Development and extensive sequencing of a broadly-consented Genome in a Bottle matched tumor-normal pair

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.09.18.613544
Top 54%
0.314DataRank
Top 54%6 citations

Vaidehi Patel, Nathan D. Olson, Hua‐Jun He, Kenneth D. Cole, Alexander A. Gooden +78 more

A Comprehensive Evaluation of Generalizability of Deep Learning-Based Hi-C Resolution Improvement Methods

Genes(2023)10.3390/genes15010054
N/A
0.312DataRank · unranked
5 citations

Atishay Jain, Madeline Hughes, Justin Wagner, Ritambhara Singh, Ghulam Murtaza

Small variant benchmark from a complete assembly of X and Y chromosomes

Nature Communications(2025)10.1038/s41467-024-55710-z
Top 54%
0.312DataRank
Top 54%7 citations

Nathan D. Olson, Jennifer McDaniel, Lindsay Harris, Brendan J. Pinto, David Jáspez +22 more

Interactive exploratory data analysis of Integrative Human Microbiome Project data using Metaviz

F1000Research(2021)10.12688/f1000research.24345.2
N/A
0.119DataRank · unranked
1 citations

Jayaram Kancherla, Domenick J. Braccia, James Matsumara, Victor Felix, Jonathan Crabtree +3 more

Interactive exploratory data analysis of Integrative Human Microbiome Project data using Metaviz

F1000Research(2020)10.12688/f1000research.24345.1
N/A
0DataRank · unranked
3 citations

Jayaram Kancherla, Domenick J. Braccia, James Matsumara, Victor Felix, Jonathan Crabtree +3 more

GrapHiC: An integrative graph based approach for imputing missing Hi-C reads

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.10.19.512942
N/A
0DataRank · unranked
1 citations

Justin Wagner, Justin M. Zook, Ritambhara Singh, Ghulam Murtaza

Benchmarking of small and large variants across tandem repeats

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.10.29.564632
N/A
0DataRank · unranked
17 citations

Egor Dolzhenko, Helyaneh Ziaei Jam, Sean K. McKenzie, Nathan D. Olson, Wouter De Coster +9 more

Analysis and benchmarking of small and large genomic variants across tandem repeats

Nature Biotechnology(2024)10.1038/s41587-024-02225-z
N/A
0DataRank · unranked
67 citations

Egor Dolzhenko, Helyaneh Ziaei Jam, Sean K. McKenzie, Nathan D. Olson, Wouter De Coster +9 more

scGrapHiC: deep learning-based graph deconvolution for Hi-C using single cell gene expression

Bioinformatics(2024)10.1093/bioinformatics/btae223
N/A
0DataRank · unranked
5 citations

Byron Butaney, Justin Wagner, Ritambhara Singh, Ghulam Murtaza

Multiscale Analysis of Pangenome Enables Improved Representation of Genomic Diversity For Repetitive And Clinically Relevant Genes

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.08.05.502980
N/A
0DataRank · unranked
5 citations

Sairam Behera, Asif Khalak, Fritz J. Sedlazeck, Justin Wagner, Justin M. Zook +1 more