James Emmanuel San

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 18 papers. Top paper: “Whole Genome Sequencing of SARS-CoV-2: Adapting Illumina Protocols for Quick and Accurate Outbreak Investigation during a Pandemic”.

Whole Genome Sequencing of SARS-CoV-2: Adapting Illumina Protocols for Quick and Accurate Outbreak Investigation during a Pandemic

Genes(2020)10.3390/genes11080949

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0DataRank · unranked

96 citations

Jennifer Giandhari, Houriiyah Tegally, Eduan Wilkinson, Benjamin Chimukangara, Richard Lessells +12 more

Omicron extensively but incompletely escapes Pfizer BNT162b2 neutralization

Nature(2021)10.1038/s41586-021-04387-1

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0DataRank · unranked

1193 citations

Laurelle Jackson, David S. Khoury, Khadija Khan, Thandeka Moyo-Gwete, Houriiyah Tegally +58 more

Omicron extensively but incompletely escapes Pfizer BNT162b2 neutralization

Nature(2021)10.1038/d41586-021-03824-5

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0DataRank · unranked

188 citations

Laurelle Jackson, David S. Khoury, Khadija Khan, Thandeka Moyo-Gwete, Houriiyah Tegally +29 more

HIV-1 and SARS-CoV-2: Patterns in the evolution of two pandemic pathogens

Cell Host & Microbe(2021)10.1016/j.chom.2021.05.012

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115 citations

Elena Giorgi, Srirupa Chakraborty, Kien Nguyen, Tanmoy Bhattacharya, James Theiler +51 more

Treatment outcomes of drug susceptible Tuberculosis in private health facilities in Lagos, South-West Nigeria

PLoS ONE(2021)10.1371/journal.pone.0244581

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25 citations

Victor Abiola Adepoju, Felix Emeka Anyiam, James Emmanuel San, Babatunde A. Odugbemi, Francis Leonard Mpotte Hyera +5 more

SARS-CoV-2 Omicron has extensive but incomplete escape of Pfizer BNT162b2 elicited neutralization and requires ACE2 for infection

medRxiv(2021)10.1101/2021.12.08.21267417

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0DataRank · unranked

366 citations

Laurelle Jackson, David S. Khoury, Khadija Khan, Thandeka Moyo-Gwete, Houriiyah Tegally +29 more

SARS-CoV-2 evolved during advanced HIV disease immunosuppression has Beta-like escape of vaccine and Delta infection elicited immunity

medRxiv(2021)10.1101/2021.09.14.21263564

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23 citations

Farina Karim, Gila Lustig, James Emmanuel San, Tandile Hermanus, Houriiyah Tegally +24 more

Rapid epidemic expansion of the SARS-CoV-2 Omicron variant in southern Africa

Nature(2022)10.1038/s41586-022-04411-y

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0DataRank · unranked

1910 citations

Sikhulile Moyo, Daniel G. Amoako, Houriiyah Tegally, Cathrine Scheepers, Christian L. Althaus +94 more

SARS-CoV-2 prolonged infection during advanced HIV disease evolves extensive immune escape

Cell Host & Microbe(2022)10.1016/j.chom.2022.01.005

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241 citations

Farina Karim, Gila Lustig, James Emmanuel San, Tandile Hermanus, Houriiyah Tegally +23 more

Selection Analysis Identifies Clusters of Unusual Mutational Changes in Omicron Lineage BA.1 That Likely Impact Spike Function

Molecular Biology and Evolution(2022)10.1093/molbev/msac061

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123 citations

Spyros Lytras, Alexander G. Lucaci, Wolfgang Maier, Björn Grüning, Stephen D. Shank +33 more

Omicron sub-lineages BA.4/BA.5 escape BA.1 infection elicited neutralizing immunity

medRxiv(2022)10.1101/2022.04.29.22274477

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86 citations

Farina Karim, Yashica Ganga, Mallory Bernstein, Zesuliwe Jule, Kajal Reedoy +27 more

Dispersal patterns and influence of air travel during the global expansion of SARS-CoV-2 variants of concern

Cell(2023)10.1016/j.cell.2023.06.001

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72 citations

Eduan Wilkinson, Joseph L.-H. Tsui, Monika Moir, Darren Martin, Anderson F. Brito +16 more

Evaluation of miniaturized Illumina DNA preparation protocols for SARS-CoV-2 whole genome sequencing

PLoS ONE(2023)10.1371/journal.pone.0283219

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10 citations

James Emmanuel San, Derek Tshiabuila, Yeshnee Naidoo, Yusasha Pillay, Akhil Maharaj +8 more

An emerging clade of Chikungunya West African genotype discovered in real-time during 2023 outbreak in Senegal

medRxiv(2023)10.1101/2023.11.14.23298527

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16 citations

Houriiyah Tegally, Yajna Ramphal, Ndiaye Seyni, Marièma Sarr, M.M. Diop +40 more

Comparing SARS-CoV-2 sequencing methodologies during early phase detection of the Delta variant in South Africa

Research Square(2023)10.21203/rs.3.rs-2310293/v1

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0 citations

Derek Tshiabuila, Yajna Ramphal, Jennifer Giandhari, Carel J. van Heerden, Cheryl Baxter +9 more

Consensus statement from the first RdRp Summit: advancing RNA virus discovery at scale across communities

Frontiers in Virology(2024)10.3389/fviro.2024.1371958

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20 citations

Ingrida Olendraitė, Marco Forgia, Li Chuin Chong, Luke S. Hillary, Simon Roux +42 more

Genomic epidemiology and immune escape of SARS-CoV-2 recombinant strains circulating in Botswana

IJID Regions(2024)10.1016/j.ijregi.2024.100484

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2 citations

Irene Gobe, Kedumetse Seru, Dorcas Maruapula, Nokuthula Ndlovu, Boitumelo J.L Zuze +10 more

Identifying genomic surveillance gaps in Africa for the global public health response to West Nile virus: a systematic review

The Lancet Microbe(2025)10.1016/j.lanmic.2025.101176

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4 citations

Nikita Sitharam, L. Marije Hofstra, Graeme Dor, Gaspary Mwanyika, Martina L. Reichmuth +60 more