Peter L. Freddolino

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 3%percentile

1.0Author DataRank

Indexed papers

1in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 1 indexed paper attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Functions of Essential Genes and a Scale-Free Protein Interaction Network Revealed by Structure-Based Function and Interaction Prediction for a Minimal Genome

Journal of Proteome Research(2021)10.1021/acs.jproteome.0c00359

Top 19%

1.0DataRank

Top 19%27 citations

Wei Zheng, Micah Cheng, Gilbert S. Omenn, Peter L. Freddolino, Yang Zhang +1 more

Papers

Driven by 21 papers — median percentile 81. Top paper: “Functions of Essential Genes and a Scale-Free Protein Interaction Network Revealed by Structure-Based Function and Interaction Prediction for a Minimal Genome”.

Functions of Essential Genes and a Scale-Free Protein Interaction Network Revealed by Structure-Based Function and Interaction Prediction for a Minimal Genome

Journal of Proteome Research(2021)10.1021/acs.jproteome.0c00359

Top 19%

1.0DataRank

Top 19%27 citations

Wei Zheng, Micah Cheng, Gilbert S. Omenn, Peter L. Freddolino, Yang Zhang +1 more

Principles of mRNA control by human PUM proteins elucidated from multimodal experiments and integrative data analysis

RNA(2020)10.1261/rna.077362.120

N/A

0DataRank · unranked

28 citations

Trista Schagat, Michelle T. Paulsen, Brian Magnuson, Mats Ljungman, Daeyoon Park +5 more

Dynamic landscape of protein occupancy across the Escherichia coli chromosome

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.01.29.924811

N/A

0DataRank · unranked

5 citations

Haley M. Amemiya, Thomas J. Goss, Saeed Tavazoie, Peter L. Freddolino

Persistent Epigenetic Reprogramming of Sweet Taste by Diet

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.03.25.007773

N/A

0DataRank · unranked

3 citations

Morteza Khabiri, Brendan T. Genaw, Christina E. May, Peter L. Freddolino, Monica Dus +1 more

Differential processing and localization of human Nocturnin controls metabolism of mRNA and nicotinamide dinucleotide metabolites

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.01.12.903534

N/A

0DataRank · unranked

1 citations

Kelsey Hughes, Rucheng Diao, Sarah F. Pearce, Raymond C. Trievel, Joanna Rorbach +3 more

Gut Fungi Possess a Conserved Toxin Immunity Gene of Bacterial Origin

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.10.15.341461

N/A

0DataRank · unranked

0 citations

Chengxin Zhang, Peter L. Freddolino, Yang Zhang, Syed M. Rizvi

A Vulnerability in Popular Molecular Dynamics Packages Concerning Langevin and Andersen Dynamics

Figshare(2020)10.17615/pnfj-3n14

N/A

0DataRank · unranked

0 citations

Hao Fan, Robert A. Duke, Terry P. Lybrand, Peter L. Freddolino, David S. Cerutti

The leucine-responsive regulatory proteins/feast-famine regulatory proteins: an ancient and complex class of transcriptional regulators in bacteria and archaea

Critical Reviews in Biochemistry and Molecular Biology(2021)10.1080/10409238.2021.1925215

N/A

0DataRank · unranked

47 citations

Peter L. Freddolino, Christine A. Ziegler

Distinct heterochromatin‐like domains promote transcriptional memory and silence parasitic genetic elements in bacteria

The EMBO Journal(2021)10.15252/embj.2021108708

N/A

0DataRank · unranked

29 citations

Thomas J. Goss, Taylor M. Nye, Rebecca L. Hurto, Lyle A. Simmons, Peter L. Freddolino +1 more

Uncovering Transcriptional Regulators and Targets of sRNAs Using an Integrative Data-Mining Approach: H-NS-Regulated RseX as a Case Study

Frontiers in Cellular and Infection Microbiology(2021)10.3389/fcimb.2021.696533

N/A

0DataRank · unranked

12 citations

Alyssa M. Ekdahl, Angela Chen, Abigail N. Leistra, Bridget Li, Javier González Martínez +6 more

TNFRSF13B polymorphisms counter microbial adaptation to enteric IgA

JCI Insight(2021)10.1172/jci.insight.148208

N/A

0DataRank · unranked

6 citations

Mayara Garcia de Mattos Barbosa, Daniel Huynh, Adam R. Lefferts, Juhi Katta, Cyra Kharas +9 more

Epistasis at the SARS-CoV-2 RBD Interface and the Propitiously Boring Implications for Vaccine Escape

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.08.30.458225

N/A

0DataRank · unranked

10 citations

Guilhem Faure, Yuri I. Wolf, Peter L. Freddolino, Feng Zhang, Eugene V. Koonin +1 more

Natural IgA and TNFRSF13B polymorphism: a double edged sword fueling balancing selection

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.01.29.428850

N/A

0DataRank · unranked

1 citations

Mayara Garcia de Mattos Barbosa, Daniel Huynh, Adam R. Lefferts, Juhi Katta, Cyra Kharas +9 more

HP1 oligomerization compensates for low-affinity H3K9me recognition and provides a tunable mechanism for heterochromatin-specific localization

Science Advances(2022)10.1126/sciadv.abk0793

N/A

0DataRank · unranked

27 citations

Ziyuan Chen, Joshua Karslake, Ali Farhat, Amanda Ames, Gulzhan Raiymbek +3 more

TripletGO: Integrating Transcript Expression Profiles with Protein Homology Inferences for Gene Function Prediction

Genomics Proteomics & Bioinformatics(2022)10.1016/j.gpb.2022.03.001

N/A

0DataRank · unranked

11 citations

Chengxin Zhang, Yan Liu, Gilbert S. Omenn, Peter L. Freddolino, Dong‐Jun Yu +2 more

Escherichia coli YigI is a conserved ɣ-proteobacterial acyl-CoA thioesterase permitting metabolism of unusual fatty acid substrates

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.01.10.475765

N/A

0DataRank · unranked

0 citations

Theresa Proctor, Rucheng Diao, Peter L. Freddolino, Michael G. Schmidt

E. coli Leucine-responsive regulatory protein bridges DNA in vivo and tunably dissociates in the presence of exogenous leucine

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.03.07.483379

N/A

0DataRank · unranked

0 citations

Peter L. Freddolino, Christine A. Ziegler

Genetic context effects can override canonical cis regulatory elements in Escherichia coli

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.03.07.483377

N/A

0DataRank · unranked

0 citations

Chase D. Lindeboom, Peter L. Freddolino, Scott A. Scholz

Deep mutational scanning highlights a new role for cytosolic regions in Hrd1 function

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.04.03.535444

N/A

0DataRank · unranked

1 citations

Jiwon Hwang, Jennifer E. Russ, Jeremy W. Schroeder, Peter L. Freddolino, Ryan D. Baldridge +1 more

A Well-Mixed E. coli Genome: Widespread Contacts Revealed by Tracking Mu Transposition

Cell(2020)10.1016/j.cell.2020.01.031

N/A

0DataRank · unranked

29 citations

Peter L. Freddolino, Rasika M. Harshey, David M. Walker

RNase H genes cause distinct impacts on RNA:DNA hybrid formation and mutagenesis genome-wide

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.05.08.539860

N/A

0DataRank · unranked

0 citations

Rebecca L. Hurto, Justin R. Randall, Katherine J. Wozniak, Taylor A. Timko, Taylor M. Nye +4 more

Peter L. Freddolino

Indexed papers

Top data-sharing exemplar

Papers