🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Koushik Kasavajhala

Graduate Program in Biochemistry and Structural Biology, ‡Department of Chemistry, and §Laufer Center for Physical and Quantitative Biology, Stony Brook University, Stony Brook, New York 11794, United States

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile
0Author DataRank

Indexed papers

0in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 7 papers. Top paper: “ff14SB: Improving the Accuracy of Protein Side Chain and Backbone Parameters from ff99SB”.

ff14SB: Improving the Accuracy of Protein Side Chain and Backbone Parameters from ff99SB

Journal of Chemical Theory and Computation(2015)10.1021/acs.jctc.5b00255
N/A
1.4DataRank · unranked
10859 citations

Carmenza Martinez, Koushik Kasavajhala, Lauren Wickstrom, Kevin E. Hauser, Carlos Simmerling +3 more

Exploring Protocols to Build Reservoirs to Accelerate Replica Exchange MD Simulations

ChemRxiv(2020)10.26434/chemrxiv.12328007
N/A
0DataRank · unranked
0 citations

kenneth lam, Carlos Simmerling, Koushik Kasavajhala

Exploring Protocols to Build Reservoirs to Accelerate Replica Exchange MD Simulations

ChemRxiv(2020)10.26434/chemrxiv.12328007.v1
N/A
0DataRank · unranked
0 citations

kenneth lam, Carlos Simmerling, Koushik Kasavajhala

Accelerating the Ensemble Convergence of RNA Hairpin Simulations with a Replica Exchange Structure Reservoir

Journal of Chemical Theory and Computation(2022)10.1021/acs.jctc.2c00065
N/A
0DataRank · unranked
11 citations

Koushik Kasavajhala, Sarah Gunasekera, Carlos Simmerling, kenneth lam

AmberTools

Journal of Chemical Information and Modeling(2023)10.1021/acs.jcim.3c01153
N/A
0DataRank · unranked
1916 citations

Hasan Metin Aktulga, Kellon Belfon, David S. Cerutti, G. Andrés Cisneros, Vinícius Wilian D. Cruzeiro +42 more

Exploring the Transferability of Replica Exchange Structure Reservoirs to Accelerate Generation of Ensembles for Alternate Hamiltonians or Protein Mutations

Journal of Chemical Theory and Computation(2023)10.1021/acs.jctc.3c00005
N/A
0DataRank · unranked
4 citations

Carlos Simmerling, Koushik Kasavajhala

Recent Developments in Amber Biomolecular Simulations

Journal of Chemical Information and Modeling(2025)10.1021/acs.jcim.5c01063
N/A
0DataRank · unranked
131 citations

David S. Cerutti, Vinícius Wilian D. Cruzeiro, Thomas A. Darden, Robert E. Duke, Mahdieh Ghazimirsaeed +26 more