Matt Pennell

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 18 papers. Top paper: “The evolutionary and functional significance of germline immunoglobulin gene variation”.

The evolutionary and functional significance of germline immunoglobulin gene variation

Trends in Immunology(2022)10.1016/j.it.2022.11.001

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0DataRank · unranked

52 citations

Oscar L. Rodriguez, Corey T. Watson, Victor Greiff, Matt Pennell

On the Decoupling of Evolutionary Changes in mRNA and Protein Levels

Molecular Biology and Evolution(2023)10.1093/molbev/msad169

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0DataRank · unranked

51 citations

Alexander L. Cope, Jianzhi Zhang, Matt Pennell, Daohan Jiang

Evaluating the Performance of Widely Used Phylogenetic Models for Gene Expression Evolution

Genome Biology and Evolution(2023)10.1093/gbe/evad211

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0DataRank · unranked

24 citations

Shanyun Wu, Daohan Jiang, Matt Pennell, Jose Rafael Dimayacyac

Evaluating the Performance of Widely Used Phylogenetic Models for Gene Expression Evolution

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.02.09.527893

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0DataRank · unranked

4 citations

Shanyun Wu, Daohan Jiang, Matt Pennell, Jose Rafael Dimayacyac

Saccharomycotina yeasts defy longstanding macroecological patterns

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.08.29.555417

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0DataRank · unranked

2 citations

Marie‐Claire Harrison, Dana A. Opulente, Abigail L. LaBella, John F. Wolters, Xiaofan Zhou +6 more

Decoupling of evolutionary changes in mRNA and protein levels

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.04.08.536110

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0DataRank · unranked

1 citations

Alexander L. Cope, Jianzhi Zhang, Matt Pennell, Daohan Jiang

Alternative mutational architectures producing identical M-matrices can lead to different patterns of evolutionary divergence

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.08.11.553044

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0DataRank · unranked

1 citations

Matt Pennell, Daohan Jiang

Unifying approaches from statistical genetics and phylogenetics for mapping phenotypes in structured populations

PLoS Biology(2024)10.1371/journal.pbio.3002847

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0DataRank · unranked

36 citations

Michael D. Edge, Matt Pennell, Joshua G. Schraiber

Saccharomycotina yeasts defy long-standing macroecological patterns

Proceedings of the National Academy of Sciences(2024)10.1073/pnas.2316031121

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0DataRank · unranked

13 citations

Marie‐Claire Harrison, Dana A. Opulente, Abigail L. LaBella, John F. Wolters, Xiaofan Zhou +6 more

Assessing Assembly Errors in Immunoglobulin Loci: A Comprehensive Evaluation of Long-read Genome Assemblies Across Vertebrates

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.07.19.604360

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0DataRank · unranked

6 citations

Corey T. Watson, Yana Safonova, Matt Pennell, Anton Bankevich, Yixin Zhu

Unifying approaches from statistical genetics and phylogenetics for mapping phenotypes in structured populations

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.02.10.579721

N/A

0DataRank · unranked

3 citations

Michael D. Edge, Matt Pennell, Joshua G. Schraiber

Convergent expansions of keystone gene families drive metabolic innovation in a major eukaryotic clade

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.07.22.604484

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0DataRank · unranked

1 citations

Joshua G. Schraiber, Johnathan G. Crandall, Abigail L. LaBella, Dana A. Opulente, Marie‐Claire Harrison +8 more

Evaluating methods for B-cell clonal family assignment

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.05.29.596491

N/A

0DataRank · unranked

0 citations

Katrina M. Kaur, Rituparna Banerjee, Felix Breden, Matt Pennell, Katalin Voss

Applying phylogenetic methods for species delimitation to distinguish B-cell clonal families

Frontiers in Immunology(2024)10.3389/fimmu.2024.1505032

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0DataRank · unranked

0 citations

Katrina M. Kaur, Rituparna Banerjee, Felix Breden, Matt Pennell, Katalin Voss

CloseRead: a tool for assessing assembly errors in immunoglobulin loci applied to vertebrate long-read genome assemblies

Genome biology(2025)10.1186/s13059-025-03594-7

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0DataRank · unranked

7 citations

Corey T. Watson, Yana Safonova, Matt Pennell, Anton Bankevich, Yixin Zhu

PlantCAD2: a DNA foundation model for interpreting genomes across flowering plants

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.08.27.672609

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0DataRank · unranked

8 citations

Aaron Gokaslan, Sheng‐Kai Hsu, Szu-Ping Chen, Zong-Yan Liu, Edgar Marroquin +8 more

Discovery of additional ancient genome duplications in yeasts

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.08.31.673279

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0DataRank · unranked

2 citations

Linda C. Horianopoulos, Carla Gonçalves, Jacob L. Steenwyk, Ana Pontes, Paula Gonçalves +4 more

Alternative Mutational Architectures Producing Identical M-Matrices can Lead to Different Patterns of Evolutionary Divergence

Genome Biology and Evolution(2025)10.1093/gbe/evaf099

N/A

0DataRank · unranked

0 citations

Matt Pennell, Daohan Jiang