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DNA-guided transcription factor cooperativity shapes face and limb mesenchyme

Cell(2024)10.1016/j.cell.2023.12.032Source: DataRank Database

DNA-guided transcription factor cooperativity shapes face and limb mesenchyme is a research paper published in Cell (2024). On theSindex it has a DataRank of 1.5. It has been cited 80 times, with 75 citing works in its 1-hop citation network.

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1.5DataRank · unranked

Scored on demand from live citation data

Deposits data Open Access80 citations · 75 citing works in its network

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Linked data & code

geo cellosaurus gen gwas refsnp refseq igsr uniprot pdb

Data availability

Repositories this paper deposited data in (declared in PubMed).

GEOGSE230319
PDB8OSB

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›Methodology & internals

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Pipeline:MetadataData-paper checkEnrichmentCitation networkScoring

Enrichment:Funding (18 grants)OA: hybridTopics (62)IDs (PubMed, PMC)Annotations (9)

FAIR Checklist

Context only (not used in score)

Findable (1/2)

Has DOI

Accessible (1/2)

Open Access

Interoperable (0/2)

Reusable (0/3)

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DataRank Breakdown

Base Score 44%Citation Network 56%

Base Score Contribution

0.659

From this paper's citation signal

Citation Network Contribution

0.826

From 53 citing papers with measurable signal

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Top 5 citers driving the network score

Ranked by each citer's contribution to N(p) — log1p(C_q) divided by its reference count — out of 75 citers.

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Current Opinion in Structural Biology202414 citations56 referencesContributes 0.048
Twist1 Acts Upstream of the Dlx5-Hand2 Pathway to Pattern the Mammalian Jaw
Journal of Dental Research20245 citations39 referencesContributes 0.046
Spatial enhancer activation influences inhibitory neuron identity during mouse embryonic development
Nature Neuroscience202433 citations92 referencesContributes 0.038
scRegulate: single-cell regulatory-embedded variational inference of transcription factor activity from gene expression
Bioinformatics20252 citations32 referencesContributes 0.034

Authors (13)

Ekaterina Morgunova ORCID,Sahin Naqvi ORCID,Seppe Goovaerts ORCID,Maram Bader,Mervenaz Koska ORCID

Live enrichment

PubMed:38262408 PMC:PMC10872279

National Institutes of Health

Grant: 2T32AR007422-36A1

Postgraduate Training Program in Epithelial Biology

National Institutes of Health

Grant: P30 CA124435

National Institutes of Health

Grant: R35 GM131757

Damon Runyon Cancer Research Foundation

Grant: DRG-2420-21

Biotechnology and Biological Sciences Research Council

Grant: BB/V00736X/1

NIDCR NIH HHS

Grant: K99 DE032729

NIDCR NIH HHS

Grant: R01 DE027023

NIAMS NIH HHS

Grant: T32 AR007422

Swedish Research Council

Grant: unidentified

unidentified

National Institutes of Health

Grant: 3P30CA124435-08S1

Stanford University Cancer Center

National Institutes of Health

Grant: 1K99DE032729-01

Mapping and prediction of quantitative transcription factor dosage effects to understand variation in craniofacial morphology and disease

National Institutes of Health

Grant: 5R01DE027023-02

The Genetic Architecture of Human Facial Morphology

National Institutes of Health

Grant: 2R35GM131757-06

Uncovering fundamentals of gene regulation by enhancers

Helen Hay Whitney Foundation

NOMIS Stiftung

Howard Hughes Medical Institute

School of Medicine, Stanford University

Vetenskapsrådet

hybridLicense: CC BY

publisherhttps://api.elsevier.com/content/article/PII:S0092867423014381?httpAccept=text/xml

publisherhttps://api.elsevier.com/content/article/PII:S0092867423014381?httpAccept=text/plain

https://doi.org/10.1016/j.cell.2023.12.032

https://pubmed.ncbi.nlm.nih.gov/38262408

https://epn-library.esrf.fr/flora/jsp/index_view_direct_anonymous.jsp?record=doc:PUB_ESRF:63665

Fields of Study

0301 basic medicine03 medical and health sciences

MeSH Terms

ExtremitiesMesodermAnimalsHumansMiceDNA-Binding ProteinsTranscription FactorsDNAGene Expression RegulationBinding SitesEmbryonic DevelopmentBasic Helix-Loop-Helix Proteins

Keywords

Transcription factorFaceCooperativityneural crestlimbbHLHMesenchymeTwist1HomeodomainCoordinatorAlx FactorsBiomedical and clinical sciencesPROTEINMOUSEMedical and Health SciencesMesodermMiceBasic Helix-Loop-Helix Transcription Factors11 Medical and Health SciencesALX4TWISTBiological SciencesDNA-Binding ProteinsSKELETOGENESISBINDING SPECIFICITYLife Sciences & BiomedicineBasic Helix-Loop-Helix ProteinsBiochemistry & Molecular BiologyEmbryonic DevelopmentDATA-COLLECTIONMECHANISMSGeneticsHumansAnimalsOPTIMIZATIONScience & TechnologyBinding Sites31 Biological sciencesExtremitiesCell Biology32 Biomedical and clinical sciencesDNA06 Biological SciencesRESOLUTIONGene Expression RegulationBiochemistry and Cell BiologyDevelopmental BiologyTranscription Factors