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SPIDR enables multiplexed mapping of RNA-protein interactions and uncovers a mechanism for selective translational suppression upon cell stress

Cell(2025)10.1016/j.cell.2025.06.042Source: DataRank Database

SPIDR enables multiplexed mapping of RNA-protein interactions and uncovers a mechanism for selective translational suppression upon cell stress is a research paper published in Cell (2025). On theSindex it has a DataRank of 0.512. It has been cited 19 times, with 18 citing works in its 1-hop citation network.

N/A

0.512DataRank · unranked

Scored on demand from live citation data

Open Access19 citations · 18 citing works in its network

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Linked data & code

geo gen ensembl uniprot pdb doi

DataRank reads this dataset's downstream impact straight off the citation graph — no black box, no proprietary weighting. How is this computed?

›Methodology & internals

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Pipeline:MetadataData-paper checkEnrichmentCitation networkScoring

Enrichment:Funding (16 grants)Impact (FWCI 7.54)OA: hybridTopics (48)IDs (PubMed, PMC, OpenAlex)Annotations (6)

FAIR Checklist

Context only (not used in score)

Findable (1/2)

Has DOI

Accessible (1/2)

Open Access

Interoperable (0/2)

Reusable (0/3)

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DataRank Breakdown

Base Score 88%Citation Network 12%

Base Score Contribution

0.449

From this paper's citation signal

Citation Network Contribution

0.0627

From 7 citing papers with measurable signal

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Top 5 citers driving the network score

Ranked by each citer's contribution to N(p) — log1p(C_q) divided by its reference count — out of 18 citers.

CircTarget: a comprehensive database of circRNA–target RNA interactions across multiple cell types
Nucleic Acids Research20253 citations60 referencesContributes 0.023
A ribosomal kinetic checkpoint governs selective mRNA recruitment
bioRxiv (Cold Spring Harbor Laboratory)20261 citations42 referencesContributes 0.017
Long noncoding RNA regulation of immunity
Nature Immunology20263 citations131 referencesContributes 0.011
The RNA-binding protein PRRC2B preserves 5′ TOP mRNA during starvation to maintain ribosome biogenesis during nutrient recovery
Nucleic Acids Research20251 citations67 referencesContributes 0.010
Conserved Functions of LARP1 Proteins in Eukaryotes
Wiley Interdisciplinary Reviews - RNA20251 citations123 referencesContributes 0.006

Authors (16)

Jimmy K. Guo,Mario R. Blanco ORCID,Isabel N. Goronzy ORCID,Darvesh Gorhe ORCID,Wenzhao Dong ORCID

Live enrichment

PubMed:40701149 PMC:PMC12396178 OpenAlex:https://openalex.org/W4412570628

National Institute on Drug Abuse

Grant: R01DA053178

National Institute of Diabetes and Digestive and Kidney Diseases

Grant: U01DK127420

National Institutes of Health

Grant: R35GM128802

National Institutes of Health

Grant: R01AG071869

National Science Foundation

Grant: 2224211

EAGER: Comprehensive monitoring of protein interaction networks

National Science Foundation

Grant: 2243705

Collaborative Research: Ideas Lab: Discovery of Novel Functional RNA Classes by Computational Integration of Massively-Parallel RBP Binding and Structure Data

Rogel Cancer Center, University of Michigan

Grant: P30 CA046592

National Cancer Institute

Grant: F30CA278005

National Human Genome Research Institute

Grant: R01HG012216

Life Sciences Institute

Grant: S10OD030275

National Institute of Neurological Disorders and Stroke

Grant: R01NS140149

NIGMS NIH HHS

Grant: T32 GM149391

University of Southern California

Arnold and Mabel Beckman Foundation

Columbia University

NIH National Institute of General Medical Sciences

FWCI

7.54

Citation Percentile

1.0%

Citation Trend

2025

2026

hybridLicense: cc-by

journalhttps://doi.org/10.1016/j.cell.2025.06.042

publisherhttps://doi.org/10.1016/j.cell.2025.06.042

publisherhttps://api.elsevier.com/content/article/PII:S0092867425007433?httpAccept=text/xml

publisherhttps://api.elsevier.com/content/article/PII:S0092867425007433?httpAccept=text/plain

repositoryhttps://pubmed.ncbi.nlm.nih.gov/40701149

Fields of Study

RNA Research and SplicingRNA modifications and cancerRNA and protein synthesis mechanisms0301 basic medicine03 medical and health sciences

MeSH Terms

SS-B AntigenAutoantigensBinding SitesHumansRibonucleoproteinsRNA, MessengerRNA, Ribosomal, 18SStress, PhysiologicalProtein BiosynthesisRNA-Binding ProteinsCell Cycle ProteinsCryoelectron MicroscopyAdaptor Proteins, Signal TransducingTOR Serine-Threonine Kinases

Keywords

BiologyMechanism (biology)RNAComputational biologyCell biologyCellGeneticsGenePhysicsTranslationRibosomeRNA-binding proteinsMtorClipLarp1Binding SitesTOR Serine-Threonine KinasesCryoelectron MicroscopyCell Cycle ProteinsAutoantigensArticleSS-B AntigenRibonucleoproteinsStress, PhysiologicalProtein BiosynthesisRNA, Ribosomal, 18SHumansRNA, MessengerAdaptor Proteins, Signal Transducing