Dissecting mammalian spermatogenesis using spatial transcriptomics is a dataset published in Cell Reports (2021). On theSindex it has a DataRank of 3.0, placing it in the top 7.4% of the data-sharing corpus. It has been cited 132 times, with 100 citing works in its 1-hop citation network. Its calibrated FAIR score is 67/100.
Ranks in the top 7% for downstream scientific impact
Linked data & code
DataRank reads this dataset's downstream impact straight off the citation graph — no black box, no proprietary weighting. How is this computed?
FAIR checklist signals are shown for context only and do not affect DataRank scoring.
Full FAIR picture · advisory
The headline score is computed from the scored criteria — the fact-shaped checks (a repository, an accession, a licence) that two independent models agree on. The advisory criteria below are real FAIR guidance but rest on judgment calls that models read differently, so they inform without moving the number.
“The raw sequencing data supporting the findings of this study are available in NCBI BioProject database with BioProject ID: PRJNA668433.”
The paper gives a BioProject accession, which is a persistent identifier scheme.
RDA-F1-01D — FAIR Data Maturity Model: 'Data is identified by a persistent identifier' (priorit · RDA-F1-02D — FAIR Data Maturity Model: 'Data is identified by a globally unique identifier' · FsF-F1-02D — F-UJI/FAIRsFAIR: 'Data is assigned a persistent identifier'
“The raw sequencing data supporting the findings of this study are available in NCBI BioProject database with BioProject ID: PRJNA668433.”
The paper names NCBI BioProject, a recognized repository, as the holder of the raw data.
RDA-F4-01M — FAIR Data Maturity Model: metadata is offered so it can be harvested and indexed ( · NIH DMS Policy Element 4 (NOT-OD-21-014) — name the repository where data will be archived · NSTC Desirable Characteristics of Data Repositories (2022) — 'Long-Term Sustainability', 'Reten
“The raw sequencing data supporting the findings of this study are available in NCBI BioProject database with BioProject ID: PRJNA668433.”
The dataset identifier appears only in the body text, not in the reference list.
FORCE11 Joint Declaration of Data Citation Principles (2014) — data should be cited as a first- · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes · FsF-F3-01M — F-UJI: 'Metadata includes the identifier of the data it describes'
Advisory · not in the published score
“The raw sequencing data supporting the findings of this study are available in NCBI BioProject database with BioProject ID: PRJNA668433.”
The statement points to a repository record with an accession.
Colavizza, Hrynaszkiewicz, Staden, Whitaker & McGillivray (2020), 'The citation advantage of li · Springer Nature research data policy — Data Availability Statements: standard statement templat · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes
“The processed data including the gene expression matrices, bead location matrices, and the NMFreg-enabled cell type assignment matrices are available at https://www.dropbox.com/s/ygzpj0d0oh67br0/Testis_Slideseq_Data.zip?dl=0 .”
The dataset's content is described in running prose, not an itemized inventory. [majority verdict 'partial' (3/5 passes agreed)]
RDA-F2-01M — 'Rich metadata is provided to allow discovery' (priority Essential) · FsF-F2-01M — F-UJI: 'Metadata includes descriptive core elements to support data findability' · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data'
“The raw sequencing data supporting the findings of this study are available in NCBI BioProject database with BioProject ID: PRJNA668433.”
The data are stated to be available in a public repository with no precondition.
RDA-A1.1-01D — 'Data is accessible through a free access protocol' · FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · NSTC Desirable Characteristics of Data Repositories (2022) — 'Free and Easy Access'
Advisory · not in the published score
“The raw sequencing data supporting the findings of this study are available in NCBI BioProject database with BioProject ID: PRJNA668433.”
The paper describes that the data are available in a public repository, but does not apply an explicit access-level label such as 'open access' or 'freely available' to the data itself. [majority verdict 'partial' (4/5 passes agreed)]
FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · RDA-A1-01M — metadata contains information to enable the user to get access to the data · COAR Controlled Vocabularies — Access Rights v1.0 (open / embargoed / restricted / metadata-onl
The data are deposited in a public repository with no stated gatekeeper.
NIH Genomic Data Sharing Policy (NOT-OD-14-124) — controlled-access via a Data Access Committee · RDA-A1.2-01D — 'Data is accessible through an access protocol that supports authentication and · NIH DMS Policy Element 5 (NOT-OD-21-014) — Access, Distribution, or Reuse Considerations (conse
No sentence states when the data become available or how long they persist. [majority verdict 'no' (3/5 passes agreed)]
NIH DMS Plan Element 4 (NOT-OD-21-014) — Data Preservation, Access, and Associated Timelines · NSTC Desirable Characteristics (2022), Organizational Infrastructure: 'Retention Policy' · RDA-A2-01M — 'Metadata is guaranteed to remain available after data is no longer available'
No file format is named for the released data.
FsF-R1.3-02D — F-UJI: 'Data is available in a file format recommended by the target research co · RDA-R1.3-02D — data is expressed in a machine-understandable community standard · RDA-I1-01D — data uses a knowledge representation expressed in a standardised format
Advisory · not in the published score
No data or metadata community standard is named as applied to the data.
RDA-R1.3-01M — 'Metadata complies with a community standard' (priority Essential) · RDA-R1.3-01D — 'Data complies with a community standard' · RDA-I2-01M — '(Meta)data use vocabularies that follow FAIR principles'
“https://www.proteinatlas.org/”
The paper provides a URL to the Human Protein Atlas, an external resource used for validation, which is a repository URL identifier. [majority verdict 'yes' (3/5 passes agreed)]
RDA-I3-01M — '(meta)data include references to other (meta)data' · RDA-I3-03M — 'metadata includes qualified references to other metadata' · FsF-I3-01M — F-UJI: 'Metadata includes links between the data and its related entities'
No license is stated for the data; the article's CC BY-NC-ND license applies only to the paper.
RDA-R1.1-01M — 'Metadata includes information about the licence under which the data can be reu · RDA-R1.1-02M — 'Metadata refers to a standard reuse licence' · RDA-R1.1-03M — 'Metadata refers to a machine-understandable reuse licence'
No version token or date is given to identify a specific snapshot of the data.
DataCite Metadata Schema 4.6 — the 'Version' property · RDA-R1.2-01M — provenance information (which version was used is provenance) · NSTC Desirable Characteristics of Data Repositories (2022) — 'Provenance', 'Retention Policy'
“Custom code is available at https://github.com/thechenlab/Testis_Slide-seq .”
A machine-resolvable code repository URL is provided. [majority verdict 'yes' (4/5 passes agreed)]
NIH DMS Policy Element 2 (NOT-OD-21-014) — 'Related Tools, Software and/or Code' · FAIR4RS Principles v1.0 (Chue Hong et al., 2022; RDA/FORCE11/ReSA) — FAIR Principles for Resear · FORCE11 Software Citation Principles (Smith, Katz & Niemeyer, 2016, PeerJ CS 2:e86)
“This work was supported by an NIH New Innovator Award (DP2 AG058488-01 to E.Z.M.), an NIH Early Independence Award (DP5, 1DP5OD024583 to F.C.), the NHGRI (grant R01, R01HG010647 to E.Z.M. and F.C.), the Burroughs Wellcome Fund CASI award (to F.C.), NICHD R01 HD056034 to C.Y.C., and the Schmidt Fellows Program at the Broad Institute and the Stanley Center for Psychiatric Research (F.C.).”
Multiple grant numbers are provided with named funders. [majority verdict 'yes' (4/5 passes agreed)]
DataCite Metadata Schema 4.6 — 'FundingReference' property (funderName, funderIdentifier, award · Crossref Funder Registry — canonical funder identifiers for funding metadata · RDA-F2-01M — rich metadata provided to allow discovery (funding is part of the descriptive reco
Advisory · not in the published score
“Samples were sequenced on the Illumina NovaSeq S2 flow cell 100 cycle kit with 12 samples per run (6 samples per lane) with the read structure 42 bases Read 1, 8 bases i7 index read, 50 bases Read 2.”
The paper names specific instruments and software used to produce the data.
RDA-R1.2-01M — 'Metadata includes provenance information according to community- specific standa · FsF-R1.2-01M — F-UJI: 'Metadata includes provenance information about data creation or generati · W3C PROV-O (W3C Recommendation, 2013) — the entity/activity/agent model of provenance
No documentation object (README, codebook, etc.) is mentioned as accompanying the data.
RDA-R1-01M — '(Meta)data are richly described with a plurality of accurate and relevant attribu · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data' · NIH DMS Policy Element 3 (NOT-OD-21-014) — Standards (documentation and metadata to accompany t
Calibrated FAIR score — a parallel quality metric, independent of the DataRank citation score. See the full evaluation →
Base Score Contribution
0.734
From this paper's citation signal
Citation Network Contribution
2.3
From 95 citing papers with measurable signal
Ranked by each citer's contribution to N(p) — log1p(Cq) divided by its reference count — out of 100 citers.
National Institutes of Health
Grant: 1DP5OD024583
National Institutes of Health
Grant: DP2 AG058488-01
National Human Genome Research Institute
Grant: R01HG010647
National Human Genome Research Institute
Grant: R01
Eunice Kennedy Shriver National Institute of Child Health and Human Development
Grant: R01 HD056034
National Institute of Biomedical Imaging and Bioengineering
Grant: 2T32EB001680
NIA NIH HHS
Grant: R01 AG069725
NIA NIH HHS
Grant: DP2 AG058488
NIH HHS
Grant: DP5 OD024583
NIBIB NIH HHS
Grant: T32 EB001680
National Institutes of Health
Grant: 5T32EB001680-12
Neuroimaging Training Program
National Institutes of Health
Grant: 1DP2AG058488-01
Slide-seq: high-resolution in situ expression profiling for neuropathology
National Institutes of Health
Grant: 1DP5OD024583-01
Characterizing glioma heterogeneity with novel multiplexed nanoscale imaging technologies
National Institutes of Health
Grant: 3R01HG010647-02S1
COVID19 Slide-seq
National Institutes of Health
Grant: 5R01HD056034-03
The biology of blood-testis barrier dynamics
Lalor Foundation
Burroughs Wellcome Fund
Broad Institute
Howard Hughes Medical Institute
FWCI
6.07
Citation Percentile
1.0%
Citation Trend
Fields of Study
MeSH Terms
Keywords
Sustainable Development Goals