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Uncovering the mesendoderm gene regulatory network through multi-omic data integration

Cell Reports(2022)10.1016/j.celrep.2022.110364Source: DataRank Database

Uncovering the mesendoderm gene regulatory network through multi-omic data integration is a research paper published in Cell Reports (2022). On theSindex it has a DataRank of 0.586. It has been cited 16 times, with 12 citing works in its 1-hop citation network.

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0.586DataRank · unranked

Scored on demand from live citation data

Open Access16 citations · 12 citing works in its network

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Linked data & code

geo arrayexpress

DataRank reads this dataset's downstream impact straight off the citation graph — no black box, no proprietary weighting. How is this computed?

›Methodology & internals

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Pipeline:MetadataData-paper checkEnrichmentCitation networkScoring

Enrichment:Funding (29 grants)Impact (FWCI 1.18)OA: goldTopics (68)IDs (PubMed, PMC, OpenAlex)Annotations (2)

FAIR Checklist

Context only (not used in score)

Findable (1/2)

Has DOI

Accessible (1/2)

Open Access

Interoperable (0/2)

Reusable (0/3)

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DataRank Breakdown

Base Score 72%Citation Network 28%

Base Score Contribution

0.425

From this paper's citation signal

Citation Network Contribution

0.161

From 10 citing papers with measurable signal

Learn more about DataRank methodology →

Top 5 citers driving the network score

Ranked by each citer's contribution to N(p) — log1p(C_q) divided by its reference count — out of 12 citers.

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Authors (16)

Kitt Paraiso ORCID,Jeff Jiajing Zhou,Ira L. Blitz ORCID,Margaret B. Fish ORCID,Rebekah M. Charney ORCID

Live enrichment

PubMed:35172134 PMC:PMC8917868 OpenAlex:https://openalex.org/W4220745168

Japan Society for the Promotion of Science

Grant: T32-HD60555

Japan Society for the Promotion of Science

Grant: 22370075

National Science Foundation

Grant: 1755214

Interplay of maternal transcription factors in endoderm specification

National Science Foundation

Grant: 607142

European Initial Training Network on Developmental and Computational Biology

National Science Foundation

Grant: P41HD064556

National Science Foundation

Grant: R01DK123092

National Institutes of Health

Grant: R35GM139617

National Institutes of Health

Grant: R01GM126395

National Institutes of Health

Grant: R01HD073179

National Institutes of Health

Grant: SCR_003280

National Institutes of Health

Grant: 1S10RR025496-01

High Throughput DNA Sequencer

National Institutes of Health

Grant: 1S10OD010794-01

PacBio RS Single Molecule, Real-Time (SMRT) DNA Sequencer

National Institutes of Health

Grant: S10OD021718-01

Japan Agency for Medical Research and Development

Grant: JP19km0210085

NCI NIH HHS

Grant: P30 CA062203

NIH HHS

Grant: S10 OD021718

NCRR NIH HHS

Grant: S10 RR025496

NIH HHS

Grant: S10 OD010794

NICHD NIH HHS

Grant: T32 HD060555

National Institutes of Health

Grant: 5T32HD060555-05

Training Program in Systems Biology of Development

National Institutes of Health

Grant: 5R01DK123092-03

Sox Proteins Modulate Genomic Specificity of B-catenin Regulated Transcription in the Developing Gut

National Institutes of Health

Grant: 1S10OD021718-01

High-Throughput DNA Sequencer

National Institutes of Health

Grant: 5R35GM139617-05

Maternal transcription factors shaping early embryonic chromatin landscape

National Institutes of Health

Grant: 5R01GM126395-02

Mechanisms of Foxh1 pioneer factor action during mesendoderm development

National Institutes of Health

Grant: 5P41HD064556-08

Xenbase: The Xenopus model organism database

National Institutes of Health

Grant: 3P30CA062203-27S1

Clinical Trial Advancement and Development for Sarcomas

National Institutes of Health

Grant: 5R01HD073179-02

Deciphering the gene regulatory network controlling vertebrate endodermal fates

Ministry of Education, Culture, Sports, Science and Technology

NSF

FWCI

1.18

Citation Percentile

0.8%

Citation Trend

2021

2022

2023

2024

2025

goldLicense: cc-by

journalhttp://www.cell.com/article/S2211124722000857/pdf

publisherhttp://www.cell.com/article/S2211124722000857/pdf

publisherhttps://api.elsevier.com/content/article/PII:S2211124722000857?httpAccept=text/xml

publisherhttps://api.elsevier.com/content/article/PII:S2211124722000857?httpAccept=text/plain

journalhttps://doi.org/10.1016/j.celrep.2022.110364

Fields of Study

Genomics and Chromatin DynamicsSingle-cell and spatial transcriptomicsRNA Research and Splicing0301 basic medicine03 medical and health sciences0303 health sciences

MeSH Terms

AnimalsChromatinDNAEndodermMesodermProtein BindingRNATranscription FactorsTranscription, GeneticXenopusConsensus SequenceGene Expression Regulation, DevelopmentalGenomicsGene Regulatory NetworksGastrulation

Keywords

BiologyChromatin immunoprecipitationComputational biologyGene regulatory networkChromatinTranscription factorGeneGeneticsGene expressionPromoterXenopusendodermMesodermRna-seqGene Regulatory NetworksChip-seqAtac-seqCis-regulatory ModulesMulti-omicLinked Self-organizing Maps570Transcription, Genetic1.1 Normal biological development and functioningMedical PhysiologyBioinformatics and Computational BiologyArticle576GeneticConsensus Sequence2.1 Biological and endogenous factorsAnimalsDevelopmentalHuman GenomeGastrulationGene Expression Regulation, DevelopmentalDNAGenomicsBiological SciencesStem Cell ResearchGene Expression RegulationRNABiochemistry and Cell BiologyGeneric health relevanceMolecular Developmental BiologyTranscriptionProtein BindingTranscription Factors

Uncovering the mesendoderm gene regulatory network through multi-omic data integration

FAIR Checklist

DataRank Breakdown

Top 5 citers driving the network score

Authors (16)

Funding (29 grants)

Impact

Open Access

Topics

Annotations (Europe PMC)