A chromosome-level reference genome and pangenome for barn swallow population genomics is a dataset published in Cell Reports (2023). On theSindex it has a DataRank of 0.821, placing it in the top 24.6% of the data-sharing corpus. It has been cited 33 times, with 23 citing works in its 1-hop citation network. Its calibrated FAIR score is 79/100.
Ranks in the top 25% for downstream scientific impact
Linked data & code
DataRank reads this dataset's downstream impact straight off the citation graph — no black box, no proprietary weighting. How is this computed?
FAIR checklist signals are shown for context only and do not affect DataRank scoring.
Full FAIR picture · advisory
The headline score is computed from the scored criteria — the fact-shaped checks (a repository, an accession, a licence) that two independent models agree on. The advisory criteria below are real FAIR guidance but rest on judgment calls that models read differently, so they inform without moving the number.
“Newly generated genomic resources (variants catalog, pangenome, Cactus alignment) This study Dataverse: https://doi.org/10.13130/RD_UNIMI/IDALZG”
The paper provides a DOI for the genomic resources in the Dataverse repository.
RDA-F1-01D — FAIR Data Maturity Model: 'Data is identified by a persistent identifier' (priorit · RDA-F1-02D — FAIR Data Maturity Model: 'Data is identified by a globally unique identifier' · FsF-F1-02D — F-UJI/FAIRsFAIR: 'Data is assigned a persistent identifier'
“Dataverse”
The paper names the Dataverse repository as the holder for the genomic resources.
RDA-F4-01M — FAIR Data Maturity Model: metadata is offered so it can be harvested and indexed ( · NIH DMS Policy Element 4 (NOT-OD-21-014) — name the repository where data will be archived · NSTC Desirable Characteristics of Data Repositories (2022) — 'Long-Term Sustainability', 'Reten
“Deposited data de novo assembly for Hirundo rustica This study RefSeq: GCF_015227805.1. Genbank: GCA_015227805.3, GCA_015227815.3. NCBI BioProject: PRJNA909772”
The dataset identifiers appear in the body text (STAR Methods) but not in the reference list.
FORCE11 Joint Declaration of Data Citation Principles (2014) — data should be cited as a first- · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes · FsF-F3-01M — F-UJI: 'Metadata includes the identifier of the data it describes'
Advisory · not in the published score
“Newly generated genomic resources (variants catalog, pangenome, Cactus alignment) This study Dataverse: https://doi.org/10.13130/RD_UNIMI/IDALZG”
The data availability statement points to the Dataverse repository with a DOI.
Colavizza, Hrynaszkiewicz, Staden, Whitaker & McGillivray (2020), 'The citation advantage of li · Springer Nature research data policy — Data Availability Statements: standard statement templat · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes
“Deposited data”
The paper includes an itemised inventory (the Deposited data table) that lists the data types and identifiers. [majority verdict 'yes' (3/5 passes agreed)]
RDA-F2-01M — 'Rich metadata is provided to allow discovery' (priority Essential) · FsF-F2-01M — F-UJI: 'Metadata includes descriptive core elements to support data findability' · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data'
“Newly generated genomic resources (variants catalog, pangenome, Cactus alignment) This study Dataverse: https://doi.org/10.13130/RD_UNIMI/IDALZG”
The data are deposited in public repositories with no stated precondition.
RDA-A1.1-01D — 'Data is accessible through a free access protocol' · FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · NSTC Desirable Characteristics of Data Repositories (2022) — 'Free and Easy Access'
Advisory · not in the published score
The paper does not label the access level of the data. [majority verdict 'no' (3/5 passes agreed)]
FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · RDA-A1-01M — metadata contains information to enable the user to get access to the data · COAR Controlled Vocabularies — Access Rights v1.0 (open / embargoed / restricted / metadata-onl
The data are non-human, so no gatekeeper is needed.
NIH Genomic Data Sharing Policy (NOT-OD-14-124) — controlled-access via a Data Access Committee · RDA-A1.2-01D — 'Data is accessible through an access protocol that supports authentication and · NIH DMS Policy Element 5 (NOT-OD-21-014) — Access, Distribution, or Reuse Considerations (conse
The paper does not state how long the data will be retained. [majority verdict 'no' (3/5 passes agreed)]
NIH DMS Plan Element 4 (NOT-OD-21-014) — Data Preservation, Access, and Associated Timelines · NSTC Desirable Characteristics (2022), Organizational Infrastructure: 'Retention Policy' · RDA-A2-01M — 'Metadata is guaranteed to remain available after data is no longer available'
“All vcf files were first filtered to remove variants falling within repetitive regions”
The paper uses VCF, an open format, for variant files. [majority verdict 'yes' (4/5 passes agreed)]
FsF-R1.3-02D — F-UJI: 'Data is available in a file format recommended by the target research co · RDA-R1.3-02D — data is expressed in a machine-understandable community standard · RDA-I1-01D — data uses a knowledge representation expressed in a standardised format
Advisory · not in the published score
“Functional gene completeness, measured with BUSCO, is 96%”— not found in the paper; verdict downgraded
The paper uses BUSCO, a community standard for assessing genome assembly completeness. [downgraded to 'partial' — no verifiable quote from the paper] [majority verdict 'partial' (2/5 passes agreed)]
RDA-R1.3-01M — 'Metadata complies with a community standard' (priority Essential) · RDA-R1.3-01D — 'Data complies with a community standard' · RDA-I2-01M — '(Meta)data use vocabularies that follow FAIR principles'
“Safran et al. 14 NCBI BioProject: PRJNA323498”
The paper provides NCBI BioProject identifiers for publicly available datasets used.
RDA-I3-01M — '(meta)data include references to other (meta)data' · RDA-I3-03M — 'metadata includes qualified references to other metadata' · FsF-I3-01M — F-UJI: 'Metadata includes links between the data and its related entities'
The paper does not specify a license for the data. [majority verdict 'no' (4/5 passes agreed)]
RDA-R1.1-01M — 'Metadata includes information about the licence under which the data can be reu · RDA-R1.1-02M — 'Metadata refers to a standard reuse licence' · RDA-R1.1-03M — 'Metadata refers to a machine-understandable reuse licence'
“Genbank: GCA_015227805.3”
The GenBank accession includes a version number (.3). [majority verdict 'yes' (4/5 passes agreed)]
DataCite Metadata Schema 4.6 — the 'Version' property · RDA-R1.2-01M — provenance information (which version was used is provenance) · NSTC Desirable Characteristics of Data Repositories (2022) — 'Provenance', 'Retention Policy'
“All scripts written and used for this study This study https://doi.org/10.5281/zenodo.7474288”
The paper provides a Zenodo DOI for the scripts.
NIH DMS Policy Element 2 (NOT-OD-21-014) — 'Related Tools, Software and/or Code' · FAIR4RS Principles v1.0 (Chue Hong et al., 2022; RDA/FORCE11/ReSA) — FAIR Principles for Resear · FORCE11 Software Citation Principles (Smith, Katz & Niemeyer, 2016, PeerJ CS 2:e86)
“PRIN2017 2017CWHLHY”
The paper lists a grant number PRIN2017 2017CWHLHY.
DataCite Metadata Schema 4.6 — 'FundingReference' property (funderName, funderIdentifier, award · Crossref Funder Registry — canonical funder identifiers for funding metadata · RDA-F2-01M — rich metadata provided to allow discovery (funding is part of the descriptive reco
Advisory · not in the published score
“PacBio CLR long reads”
The paper names the specific sequencing technology used to produce the data. [majority verdict 'yes' (4/5 passes agreed)]
RDA-R1.2-01M — 'Metadata includes provenance information according to community- specific standa · FsF-R1.2-01M — F-UJI: 'Metadata includes provenance information about data creation or generati · W3C PROV-O (W3C Recommendation, 2013) — the entity/activity/agent model of provenance
No documentation object (README, codebook) is stated to accompany the data. [majority verdict 'no' (3/5 passes agreed)]
RDA-R1-01M — '(Meta)data are richly described with a plurality of accurate and relevant attribu · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data' · NIH DMS Policy Element 3 (NOT-OD-21-014) — Standards (documentation and metadata to accompany t
Calibrated FAIR score — a parallel quality metric, independent of the DataRank citation score. See the full evaluation →
Base Score Contribution
0.529
From this paper's citation signal
Citation Network Contribution
0.292
From 18 citing papers with measurable signal
Ranked by each citer's contribution to N(p) — log1p(Cq) divided by its reference count — out of 23 citers.
Ministero dell’Istruzione, dell’Università e della Ricerca
Grant: PRIN2017 2017CWHLHY
Università degli Studi di Pavia
Università degli Studi di Milano
Dipartimento di Biologia e Biotecnologie L. Spallanzani, Università degli Studi di Pavia
Howard Hughes Medical Institute
National Institutes of Health
Program for Education and Research in Biotechnology, California State University
U.S. National Library of Medicine
MeSH Terms
Keywords
Additional file 2 of A pangenome graph reference of 30 chicken genomes allows genotyping of large and complex structural variants
Additional file 2 of A pangenome graph reference of 30 chicken genomes allows genotyping of large and complex structural variants
Replication data for "A chromosome-level reference genome and pangenome for barn swallow population genomics"
Additional file 3 of A pangenome graph reference of 30 chicken genomes allows genotyping of large and complex structural variants
Additional file 4 of A pangenome graph reference of 30 chicken genomes allows genotyping of large and complex structural variants
Additional file 3 of A pangenome graph reference of 30 chicken genomes allows genotyping of large and complex structural variants
Additional file 4 of A pangenome graph reference of 30 chicken genomes allows genotyping of large and complex structural variants
Additional file 1 of A pangenome graph reference of 30 chicken genomes allows genotyping of large and complex structural variants
Additional file 1 of A pangenome graph reference of 30 chicken genomes allows genotyping of large and complex structural variants