Network analysis of large-scale ImmGen and Tabula Muris datasets highlights metabolic diversity of tissue mononuclear phagocytes is a dataset published in Cell Reports (2023). On theSindex it has a DataRank of 1.0, placing it in the top 20.1% of the data-sharing corpus. It has been cited 31 times, with 26 citing works in its 1-hop citation network. Its calibrated FAIR score is 67/100.
Ranks in the top 20% for downstream scientific impact
DataRank reads this dataset's downstream impact straight off the citation graph — no black box, no proprietary weighting. How is this computed?
FAIR checklist signals are shown for context only and do not affect DataRank scoring.
Full FAIR picture · advisory
The headline score is computed from the scored criteria — the fact-shaped checks (a repository, an accession, a licence) that two independent models agree on. The advisory criteria below are real FAIR guidance but rest on judgment calls that models read differently, so they inform without moving the number.
“The ImmGen MNP Open Source RNA sequencing dataset generated during this study has been deposited at GEO repository (GSE122108) and is publicly available as of the date of publication.”
The paper gives a GEO accession (GSE122108), which is a persistent identifier in the repository scheme. [majority verdict 'yes' (4/5 passes agreed)]
RDA-F1-01D — FAIR Data Maturity Model: 'Data is identified by a persistent identifier' (priorit · RDA-F1-02D — FAIR Data Maturity Model: 'Data is identified by a globally unique identifier' · FsF-F1-02D — F-UJI/FAIRsFAIR: 'Data is assigned a persistent identifier'
“The ImmGen MNP Open Source RNA sequencing dataset generated during this study has been deposited at GEO repository (GSE122108) and is publicly available as of the date of publication.”
The paper names GEO as the repository holding the data. [majority verdict 'yes' (4/5 passes agreed)]
RDA-F4-01M — FAIR Data Maturity Model: metadata is offered so it can be harvested and indexed ( · NIH DMS Policy Element 4 (NOT-OD-21-014) — name the repository where data will be archived · NSTC Desirable Characteristics of Data Repositories (2022) — 'Long-Term Sustainability', 'Reten
“The ImmGen MNP Open Source RNA sequencing dataset generated during this study has been deposited at GEO repository (GSE122108) and is publicly available as of the date of publication.”
The dataset's identifier (GSE122108) appears only in the body text, not as a reference-list entry. [majority verdict 'partial' (4/5 passes agreed)]
FORCE11 Joint Declaration of Data Citation Principles (2014) — data should be cited as a first- · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes · FsF-F3-01M — F-UJI: 'Metadata includes the identifier of the data it describes'
Advisory · not in the published score
“The ImmGen MNP Open Source RNA sequencing dataset generated during this study has been deposited at GEO repository (GSE122108) and is publicly available as of the date of publication. This paper also analyzes existing, publicly available data: The ImmGen Phase 1 dataset (GSE15907) and The Tabula Muris Senis dataset (GSE149590).”
The statement points at a repository record (GEO) with an accession, i.e., Colavizza category 3. [majority verdict 'yes' (4/5 passes agreed)]
Colavizza, Hrynaszkiewicz, Staden, Whitaker & McGillivray (2020), 'The citation advantage of li · Springer Nature research data policy — Data Availability Statements: standard statement templat · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes
“The ImmGen MNP OS dataset totals 337 samples and provides a source of information about individual cell subpopulations”
The dataset's content is described in running prose, not in an itemised inventory [majority verdict 'partial' (3/5 passes agreed)]
RDA-F2-01M — 'Rich metadata is provided to allow discovery' (priority Essential) · FsF-F2-01M — F-UJI: 'Metadata includes descriptive core elements to support data findability' · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data'
“The ImmGen MNP Open Source RNA sequencing dataset generated during this study has been deposited at GEO repository (GSE122108) and is publicly available as of the date of publication.”
The text gives a route to the data with no stated precondition; the data are stated to be publicly available. [majority verdict 'yes' (4/5 passes agreed)]
RDA-A1.1-01D — 'Data is accessible through a free access protocol' · FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · NSTC Desirable Characteristics of Data Repositories (2022) — 'Free and Easy Access'
Advisory · not in the published score
“The ImmGen MNP Open Source RNA sequencing dataset generated during this study has been deposited at GEO repository (GSE122108) and is publicly available as of the date of publication.”
The paper states the data are publicly available, which is an explicit access-level label for open access. [majority verdict 'yes' (4/5 passes agreed)]
FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · RDA-A1-01M — metadata contains information to enable the user to get access to the data · COAR Controlled Vocabularies — Access Rights v1.0 (open / embargoed / restricted / metadata-onl
The data are from mice, not human subjects, and no gatekeeper is named.
NIH Genomic Data Sharing Policy (NOT-OD-14-124) — controlled-access via a Data Access Committee · RDA-A1.2-01D — 'Data is accessible through an access protocol that supports authentication and · NIH DMS Policy Element 5 (NOT-OD-21-014) — Access, Distribution, or Reuse Considerations (conse
“publicly available as of the date of publication”
The paper states when the data are available (as of publication) but does not commit to how long they persist. [majority verdict 'partial' (4/5 passes agreed)]
NIH DMS Plan Element 4 (NOT-OD-21-014) — Data Preservation, Access, and Associated Timelines · NSTC Desirable Characteristics (2022), Organizational Infrastructure: 'Retention Policy' · RDA-A2-01M — 'Metadata is guaranteed to remain available after data is no longer available'
No file format is named for the released data.
FsF-R1.3-02D — F-UJI: 'Data is available in a file format recommended by the target research co · RDA-R1.3-02D — data is expressed in a machine-understandable community standard · RDA-I1-01D — data uses a knowledge representation expressed in a standardised format
Advisory · not in the published score
No community standard is named for the data. [majority verdict 'no' (4/5 passes agreed)]
RDA-R1.3-01M — 'Metadata complies with a community standard' (priority Essential) · RDA-R1.3-01D — 'Data complies with a community standard' · RDA-I2-01M — '(Meta)data use vocabularies that follow FAIR principles'
“This paper also analyzes existing, publicly available data: The ImmGen Phase 1 dataset (GSE15907) and The Tabula Muris Senis dataset (GSE149590).”
The paper provides identifiers (GSE15907, GSE149590) for other datasets it uses, and also a DOI for the code. [majority verdict 'yes' (4/5 passes agreed)]
RDA-I3-01M — '(meta)data include references to other (meta)data' · RDA-I3-03M — 'metadata includes qualified references to other metadata' · FsF-I3-01M — F-UJI: 'Metadata includes links between the data and its related entities'
No license is explicitly stated for the data; the CC BY-NC-ND license applies to the article only.
RDA-R1.1-01M — 'Metadata includes information about the licence under which the data can be reu · RDA-R1.1-02M — 'Metadata refers to a standard reuse licence' · RDA-R1.1-03M — 'Metadata refers to a machine-understandable reuse licence'
No version token or date is given for the data snapshot. [majority verdict 'no' (3/5 passes agreed)]
DataCite Metadata Schema 4.6 — the 'Version' property · RDA-R1.2-01M — provenance information (which version was used is provenance) · NSTC Desirable Characteristics of Data Repositories (2022) — 'Provenance', 'Retention Policy'
“All original code has been deposited at Zenodo and is publicly available as of the date of publication. DOI is listed in the key resources table.”
The paper provides a machine-resolvable locator (Zenodo DOI and GitHub URL) for the code. [majority verdict 'yes' (4/5 passes agreed)]
NIH DMS Policy Element 2 (NOT-OD-21-014) — 'Related Tools, Software and/or Code' · FAIR4RS Principles v1.0 (Chue Hong et al., 2022; RDA/FORCE11/ReSA) — FAIR Principles for Resear · FORCE11 Software Citation Principles (Smith, Katz & Niemeyer, 2016, PeerJ CS 2:e86)
“This work was supported by ImmGen Consortium grant AI072073 (NIAID, NIH) and in part by the Division of Intramural Research of the NIAID, NIH. The work was also partly supported by R01-AI125618 (NIAID) to M.N.A..”
The paper provides specific grant numbers (AI072073, R01-AI125618) attached to named funders. [majority verdict 'yes' (4/5 passes agreed)]
DataCite Metadata Schema 4.6 — 'FundingReference' property (funderName, funderIdentifier, award · Crossref Funder Registry — canonical funder identifiers for funding metadata · RDA-F2-01M — rich metadata provided to allow discovery (funding is part of the descriptive reco
Advisory · not in the published score
“All samples were sequenced in two separate NextSeq500 runs”
The paper names the specific instrument (NextSeq500) and software (STAR, GENCODE) used to produce the data. [majority verdict 'yes' (4/5 passes agreed)]
RDA-R1.2-01M — 'Metadata includes provenance information according to community- specific standa · FsF-R1.2-01M — F-UJI: 'Metadata includes provenance information about data creation or generati · W3C PROV-O (W3C Recommendation, 2013) — the entity/activity/agent model of provenance
Variable definitions are in the supplementary material (Data S1), not a separate documentation object with the data. [downgraded to 'no' — no verifiable quote from the paper]
RDA-R1-01M — '(Meta)data are richly described with a plurality of accurate and relevant attribu · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data' · NIH DMS Policy Element 3 (NOT-OD-21-014) — Standards (documentation and metadata to accompany t
Calibrated FAIR score — a parallel quality metric, independent of the DataRank citation score. See the full evaluation →
Base Score Contribution
0.520
From this paper's citation signal
Citation Network Contribution
0.495
From 18 citing papers with measurable signal
Ranked by each citer's contribution to N(p) — log1p(Cq) divided by its reference count — out of 26 citers.
Institut National Du Cancer
Grant: 13-10/405/AB-LC-HS
Horizon 2020
Grant: 695093
Macrophage aging and rejuvenation
Fondation ARC pour la Recherche sur le Cancer
Grant: PGA1 RF20170205515
National Institute of Allergy and Infectious Diseases
Grant: R01-AI125618
Agence Nationale de la Recherche
Grant: ANR-17-CE15-0007-01
Agence Nationale de la Recherche
Grant: ANR-18-CE12-0019-03
French National Research Agency (ANR)
Grant: ANR-17-CE15-0007
Probing Hematopoietic Stem Cell (HSC) directed immune response and memory
French National Research Agency (ANR)
Grant: ANR-18-CE12-0019
Dissection of coordinated stress responses by novel promoter elements with enhancer activity
Institut National du Cancer
Grant: unidentified
unidentified
National Institutes of Health
Grant: 5R01AI125618-03
ITACONATE AS METABOLIC REGULATOR OF INFLAMMATION
National Institutes of Health
Grant: 5R24AI072073-19
ImmGen: Gene Expression and Regulation in Immune Cells
Fields of Study
Keywords