MultiPLIER: A Transfer Learning Framework for Transcriptomics Reveals Systemic Features of Rare Disease is a research paper published in Cell Systems (2019). On theSindex it has a DataRank of 4.7. It has been cited 138 times, with 108 citing works in its 1-hop citation network.
Most gene expression datasets generated by individual researchers are too small to fully benefit from unsupervised machine-learning methods. In the case of rare diseases, there may be too few cases available, even when multiple studies are combined. To address this challenge, we utilize transfer learning to extract coordinated expression patterns and use learned patterns to analyze small rare disease datasets. We trained a pathway-level information extractor (PLIER) model on a large public data compendium comprising multiple experiments, tissues, and biological conditions and then transferred the model to small datasets in an approach we call MultiPLIER. Models constructed from the public data compendium included features that aligned well to known biological factors and were more comprehensive than those constructed from individual datasets or conditions. When transferred to rare disease datasets, the models describe biological processes related to disease severity more effectively than models trained only on a given dataset.
FAIR checklist signals are shown for context only and do not affect DataRank scoring.
Base Score Contribution
0.740
From this paper's citation signal
Citation Network Contribution
4.0
From 87 citing papers with measurable signal
Ranked by citation count — the same ordering the engine uses when summing log1p(Cq) over citers.
DataRank blends this paper's own citation count with the influence of the papers that cite it. Here, roughly 16% comes from its base citations and 84% from the citation network (87 citing papers contributed measurable signal).
Citers are pulled from OpenAlex sorted by cited_by_count:descand capped per paper, so when the cap binds we keep the highest-signal references and the score is reproducible across reruns.
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