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Imputing abundance of over 2,500 surface proteins from single-cell transcriptomes with context-agnostic zero-shot deep ensembles

Cell Systems(2024)10.1016/j.cels.2024.08.006Source: DataRank Database

Imputing abundance of over 2,500 surface proteins from single-cell transcriptomes with context-agnostic zero-shot deep ensembles is a research paper published in Cell Systems (2024). On theSindex it has a DataRank of 0. It has been cited 8 times.

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Scored on demand from live citation data

Open Access8 citations

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›Methodology & internals

datarank_citation_only_1hop_v6· scope data_onlyMethodology

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Enrichment:Funding (5 grants)Impact (FWCI 1.29)OA: greenTopics (45)IDs (PubMed, PMC, OpenAlex)SDGs (1)

FAIR Checklist

Context only (not used in score)

Findable (1/2)

Has DOI

Accessible (1/2)

Open Access

Interoperable (0/2)

Reusable (0/3)

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Authors (3)

Jiayu Zhou ORCID,BIN CHEN ORCID,Ruoqiao Chen ORCID

Live enrichment

PubMed:39243755 PMC:PMC11423933 OpenAlex:https://openalex.org/W4402295591

NIGMS

Grant: R01GM134307

NIGMS

Grant: R01GM145700

National Institutes of Health

Grant: 3R01GM134307-04S1

Repurpose open data to discover therapeutics for understudied diseases

National Institutes of Health

Grant: 5R01GM145700-04

virtual compound screening using gene expression

National Institutes of Health

FWCI

1.29

Citation Percentile

0.8%

Citation Trend

2025

2026

greenLicense: CC BY NC

repositoryhttps://pmc.ncbi.nlm.nih.gov/articles/PMC11423933/pdf/nihms-2019935.pdf

publisherhttps://api.elsevier.com/content/article/PII:S2405471224002369?httpAccept=text/xml

publisherhttps://api.elsevier.com/content/article/PII:S2405471224002369?httpAccept=text/plain

repositoryhttps://www.ncbi.nlm.nih.gov/pmc/articles/11423933

Fields of Study

Single-cell and spatial transcriptomicsBioinformatics and Genomic NetworksGene expression and cancer classification0206 medical engineering02 engineering and technologyHumansSingle-Cell AnalysisTranscriptomeMembrane ProteinsComputational BiologySequence Analysis, RNAGene Expression Profiling

MeSH Terms

HumansMembrane ProteinsSequence Analysis, RNAComputational BiologyGene Expression ProfilingSingle-Cell AnalysisTranscriptome

Keywords

Context (archaeology)Computational biologyBiologyTranscriptomeAnnotationComputer scienceArtificial intelligenceGene expressionGeneticsGeneHepatocellular carcinomaImmunotherapyProteomicsColorectal Cancersurface proteinMachine LearningScrna-seqSingle-cell OmicsZero-shot LearningCite-seqSequence Analysis, RNAGene Expression ProfilingHumansMembrane ProteinsSingle-Cell AnalysisArticle

Sustainable Development Goals

SDG 0: Zero hunger