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Piscis: A loss estimator of the F1 score enables accurate spot detection in fluorescence microscopy images via deep learning

Cell Systems(2025)10.1016/j.cels.2025.101448Source: DataRank Database

Piscis: A loss estimator of the F1 score enables accurate spot detection in fluorescence microscopy images via deep learning is a research paper published in Cell Systems (2025). On theSindex it has a DataRank of 0. It has been cited 4 times.

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4 citations

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datarank_citation_only_1hop_v6· scope data_onlyMethodology

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Enrichment:Funding (5 grants)Impact (FWCI 1.57)OA: closedTopics (27)IDs (PubMed, OpenAlex)

FAIR Checklist

Context only (not used in score)

Findable (1/2)

Has DOI

Accessible (0/2)

Interoperable (0/2)

Reusable (0/3)

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Authors (8)

Aoife O'Farrell ORCID,Jingxin Li ORCID,Sam Reffsin ORCID,Naveen Jain ORCID,Ian Dardani ORCID

Live enrichment

PubMed:41265398 OpenAlex:https://openalex.org/W4416538659

National Institutes of Health Common Fund

Burroughs Wellcome Fund

Hertz Foundation

Paul and Daisy Soros Fellowships for New Americans

Krell Institute

FWCI

1.57

Citation Percentile

0.8%

Citation Trend

2025

2026

closedLicense: http://www.elsevier.com/open-access/userlicense/1.0/

publisherhttps://api.elsevier.com/content/article/PII:S2405471225002819?httpAccept=text/xml

publisherhttps://api.elsevier.com/content/article/PII:S2405471225002819?httpAccept=text/plain

journalhttps://doi.org/10.1016/j.cels.2025.101448

repositoryhttps://pubmed.ncbi.nlm.nih.gov/41265398

Fields of Study

Single-cell and spatial transcriptomicsCell Image Analysis TechniquesAdvanced Fluorescence Microscopy TechniquesDeep LearningIn Situ Hybridization, FluorescenceMicroscopy, FluorescenceImage Processing, Computer-AssistedAlgorithmsHumans

MeSH Terms

Deep LearningAlgorithmsHumansImage Processing, Computer-AssistedMicroscopy, FluorescenceIn Situ Hybridization, Fluorescence

Keywords

Deep learningPattern recognition (psychology)False positive paradoxUSableFalse positives and false negativesEstimatorImage (mathematics)Scale (ratio)Fluorescence microscopyImage analysisSpot DetectionSpatial Transcriptomics

Piscis: A loss estimator of the F1 score enables accurate spot detection in fluorescence microscopy images via deep learning

FAIR Checklist

Authors (8)

Funding (5 grants)

Impact

Open Access

Topics