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Automated denoising of CITE-seq data with ThresholdR

Cell Reports Methods(2025)10.1016/j.crmeth.2025.101088Source: DataRank Database

Automated denoising of CITE-seq data with ThresholdR is a research paper published in Cell Reports Methods (2025). On theSindex it has a DataRank of 0. It has been cited 1 time.

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Open Access1 citations

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datarank_citation_only_1hop_v6· scope data_onlyMethodology

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Enrichment:Funding (5 grants)Impact (FWCI 0.38)OA: goldTopics (56)IDs (PubMed, PMC, OpenAlex)Annotations (1)

FAIR Checklist

Context only (not used in score)

Findable (1/2)

Has DOI

Accessible (1/2)

Open Access

Interoperable (0/2)

Reusable (0/3)

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Authors (7)

Sunil Kumar ORCID,Aleksandr Taraskin,Sujit Silas Armstrong Suthahar ORCID,Vasantika Suryawanshi ORCID,Austin W.T. Chiang ORCID

Live enrichment

PubMed:40633544 PMC:PMC12296422 OpenAlex:https://openalex.org/W4412196465

National Heart Lung and Blood Institute

Grant: P01 HL136275

National Heart Lung and Blood Institute

Grant: R35 HL145241

National Institutes of Health

Grant: 3P01HL136275-04S1

Immune Cell Interactions in Atherosclerosis

National Institutes of Health

Grant: 1R35HL145241-01

Vascular macrophages and T cells in atherosclerosis

National Institutes of Health

FWCI

0.38

Citation Percentile

0.6%

Citation Trend

2026

goldLicense: CC BY NC

journalhttps://doi.org/10.1016/j.crmeth.2025.101088

publisherhttps://doi.org/10.1016/j.crmeth.2025.101088

publisherhttps://api.elsevier.com/content/article/PII:S2667237525001249?httpAccept=text/xml

publisherhttps://api.elsevier.com/content/article/PII:S2667237525001249?httpAccept=text/plain

repositoryhttps://pubmed.ncbi.nlm.nih.gov/40633544

Fields of Study

Single-cell and spatial transcriptomicsCell Image Analysis TechniquesMicrofluidic and Bio-sensing Technologies0206 medical engineering02 engineering and technologyHumansSingle-Cell AnalysisSequence Analysis, RNATranscriptomeEpitopesGene Expression ProfilingSignal-To-Noise RatioHigh-Throughput Nucleotide Sequencing

MeSH Terms

EpitopesHumansSequence Analysis, RNAGene Expression ProfilingSingle-Cell AnalysisHigh-Throughput Nucleotide SequencingTranscriptomeSignal-To-Noise Ratio

Keywords

Noise reductionBenchmark (surveying)Noise (video)Computer scienceComputational biologyAnnotationEpitopeTranscriptomeMonoclonal antibodyPattern recognition (psychology)Artificial intelligenceBiologyAntibodyGeneGeneticsGene expressionPBMCDenoisingR PackageAutomatedCytofGaussian Mixture ModelsScrna-seqCite-seqCp: Computational BiologyHashtaggingCp: Systems BiologyEpitopesSequence Analysis, RNAReportGene Expression ProfilingHumansHigh-Throughput Nucleotide SequencingSingle-Cell AnalysisSignal-To-Noise Ratio

Automated denoising of CITE-seq data with ThresholdR

FAIR Checklist

Authors (7)

Funding (5 grants)

Impact

Open Access

Topics

Annotations (Europe PMC)