Pilot corpus: NIH-funded biomedical datasets. Any DOI can be scored on demand — network effects sharpen as coverage grows.

scTenifoldKnk: An efficient virtual knockout tool for gene function predictions via single-cell gene regulatory network perturbation

Patterns(2022)10.1016/j.patter.2022.100434Source: DataRank Database

scTenifoldKnk: An efficient virtual knockout tool for gene function predictions via single-cell gene regulatory network perturbation is a research paper published in Patterns (2022). On theSindex it has a DataRank of 1.9. It has been cited 190 times, with 176 citing works in its 1-hop citation network.

N/A

1.9DataRank · unranked

Scored on demand from live citation data

Open Access190 citations · 176 citing works in its network

Download PDF

Cite:

Linked data & code

geo omim

DataRank reads this dataset's downstream impact straight off the citation graph — no black box, no proprietary weighting. How is this computed?

›Methodology & internals

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Pipeline:MetadataData-paper checkEnrichmentCitation networkScoring

Enrichment:Funding (15 grants)Impact (FWCI 4.99)OA: goldTopics (23)Linked Datasets (2)DataCite Reuse (2)IDs (PubMed, PMC, OpenAlex)Annotations (2)

FAIR Checklist

Context only (not used in score)

Findable (2/2)

Has DOI
Indexed in repositories

Accessible (1/2)

Open Access

Interoperable (2/2)

DataCite relations
Linked datasets

Reusable (0/3)

FAIR checklist signals are shown for context only and do not affect DataRank scoring.

Run a calibrated FAIR evaluation for this paper →

We only score data papers we can read in full — never from an abstract alone.

DataRank Breakdown

Base Score 42%Citation Network 58%

Base Score Contribution

0.788

From this paper's citation signal

Citation Network Contribution

1.1

From 46 citing papers with measurable signal

Learn more about DataRank methodology →

Top 5 citers driving the network score

Ranked by each citer's contribution to N(p) — log1p(C_q) divided by its reference count — out of 176 citers.

Single-cell and spatial transcriptome analyses reveal MAZ(+) NPC-like clusters as key role contributing to glioma recurrence and drug resistance
Journal of Translational Medicine202510 citations34 referencesContributes 0.071
Plasma PFDN2 suppresses head and neck squamous cell carcinoma progression by restricting CD64 on monocyte-driven inflammatory microenvironments
Frontiers in Immunology20268 citations35 referencesContributes 0.063
A small-molecule TNIK inhibitor targets fibrosis in preclinical and clinical models
Nature Biotechnology2024286 citations95 referencesContributes 0.060
CTHRC1+ fibroblasts and SPP1+ macrophages synergistically contribute to pro-tumorigenic tumor microenvironment in pancreatic ductal adenocarcinoma
Scientific Reports202438 citations69 referencesContributes 0.053
Single-nucleus transcriptome unveils the role of ferroptosis in ischemic stroke
Heliyon202413 citations56 referencesContributes 0.047

Authors (9)

Yan Zhong ORCID,Guanxun Li ORCID,Qian Xu ORCID,Yongjian Yang ORCID,Yanan Tian ORCID

Live enrichment

PubMed:35510185 PMC:PMC9058914 OpenAlex:https://openalex.org/W4225426244

National Institutes of Health

Grant: R01-CA202697

National Institutes of Health

Grant: R35-CA197707

National Institutes of Health

Grant: R01-ES025713

National Institutes of Health

Grant: R21-AI152050

Texas A and M University

Grant: DoD GW200026

NIAID NIH HHS

Grant: R21 AI152050

NCI NIH HHS

Grant: R35 CA197707

NCI NIH HHS

Grant: R01 CA202697

NIEHS NIH HHS

Grant: R01 ES025713

NCI NIH HHS

Grant: R01 CA244359

National Institutes of Health

Grant: 5R21AI152050-02

Long noncoding RNA MALAT1 ablation reverses sepsis in mouse: epitranscriptomic mechanisms and therapeutic application

National Institutes of Health

Grant: 5R35CA197707-04

Molecular basis for dietary chemoprevention

National Institutes of Health

Grant: 5R01CA202697-05

Diet induced modifications of microbiota metabolites in colon tumorigenesis

National Institutes of Health

Grant: 5R01ES025713-03

Role of Aryl Hydrocarbon Receptor in Microbiota-Colon Stem Cell Interactions

DOD

FWCI

4.99

Citation Percentile

1.0%

Citation Trend

2022

2023

2024

2025

2026

goldLicense: CC BY

journalhttp://www.cell.com/article/S2666389922000010/pdf

publisherhttps://api.elsevier.com/content/article/PII:S2666389922000010?httpAccept=text/xml

publisherhttps://api.elsevier.com/content/article/PII:S2666389922000010?httpAccept=text/plain

journalhttps://doi.org/10.1016/j.patter.2022.100434

repositoryhttps://pubmed.ncbi.nlm.nih.gov/35510185

Fields of Study

Single-cell and spatial transcriptomicsGene Regulatory Network AnalysisCRISPR and Genetic Engineering0301 basic medicine0303 health sciences03 medical and health sciences

Keywords

GeneGene regulatory networkComputational biologyGene knockoutBiologyFunction (biology)GeneticsGene targetingGene expressionFunctional genomicsPerturbation AnalysisTensor DecompositionScrna-seqManifold AlignmentUnsupervised Machine LearningSingle-cell Rna SequencingArticle

Additional file 1 of Sox11 is enriched in myogenic progenitors but dispensable for development and regeneration of the skeletal muscle

10.6084/m9.figshare.24136298.v1figshare

Additional file 1 of Sox11 is enriched in myogenic progenitors but dispensable for development and regeneration of the skeletal muscle

10.6084/m9.figshare.24136298figshare