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Biology-inspired graph neural network encodes reactome and reveals biochemical reactions of disease

Patterns(2023)10.1016/j.patter.2023.100758Source: DataRank Database

Biology-inspired graph neural network encodes reactome and reveals biochemical reactions of disease is a research paper published in Patterns (2023). On theSindex it has a DataRank of 0. It has been cited 19 times.

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Open Access19 citations

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›Methodology & internals

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Pipeline:MetadataData-paper checkEnrichmentCitation networkScoring

Enrichment:Funding (19 grants)Impact (FWCI 1.75)OA: goldTopics (17)IDs (PubMed, PMC, OpenAlex)Annotations (2)SDGs (1)

FAIR Checklist

Context only (not used in score)

Findable (1/2)

Has DOI

Accessible (1/2)

Open Access

Interoperable (0/2)

Reusable (0/3)

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Authors (7)

Guanming Wu ORCID,Xubo Song,Francesco Raimondi ORCID,Shannon K. McWeeney ORCID,Melissa H. Wong ORCID

Live enrichment

PubMed:37521042 PMC:PMC10382942 OpenAlex:https://openalex.org/W4377291742

U.S. National Library of Medicine

Grant: T15LM007088-29

National Science Foundation

Grant: 1920304

MRI Acquistion: High Performance Computing Cluster for Data Intensive Research

National Institutes of Health

Grant: P20GM139753

National Institutes of Health

Grant: U54GM138062

National Institutes of Health

Grant: P20GM103466

National Institutes of Health

Grant: P30GM114737

National Institutes of Health

Grant: U54MD007601

National Institutes of Health

Grant: P30CA071789

National Institutes of Health

Grant: U41HG003751

NCI NIH HHS

Grant: U54 CA143728

NCI NIH HHS

Grant: U54 CA143727

National Institutes of Health

Grant: 5T15LM007088-10

TRAINING PROGRAM IN HEALTH INFORMATICS

National Institutes of Health

Grant: 3P30GM114737-02S1

Pacific Center for Emerging Infectious Diseases Research

National Institutes of Health

Grant: 2U54MD007601-31

Ola HAWAII

National Institutes of Health

Grant: 8P20GM103466-11

INBRE II: Hawaii Statewide Research & Education Partnership (HSREP)

National Institutes of Health

Grant: 3P30CA071789-14S2

Animal Carcinogenesis Core - Developmental Funds

National Institutes of Health

Grant: 5U41HG003751-07

Reactome: An Open Knowledgebase of Human Pathways

National Institutes of Health

Grant: 1P20GM139753-01A1

Integrative Center for Precision Nutrition and Human Health

National Institutes of Health

Grant: 5U54GM138062-02

Center for Pacific Innovations, Knowledge, and Opportunities (PIKO)

FWCI

1.75

Citation Percentile

0.8%

Citation Trend

2023

2024

2025

2026

goldLicense: cc-by

journalhttp://www.cell.com/article/S2666389923001034/pdf

publisherhttp://www.cell.com/article/S2666389923001034/pdf

publisherhttps://api.elsevier.com/content/article/PII:S2666389923001034?httpAccept=text/xml

publisherhttps://api.elsevier.com/content/article/PII:S2666389923001034?httpAccept=text/plain

journalhttps://doi.org/10.1016/j.patter.2023.100758

Fields of Study

Bioinformatics and Genomic NetworksComputational Drug Discovery MethodsProtein Degradation and Inhibitors0206 medical engineering02 engineering and technology

Keywords

BiologyComputational biologyDifferential gene expressionBiochemical reactionPathway Enrichment AnalysisHealthy TissueReaction NetworkGraph Neural NetworkHuman ReactomeMolecular Disease Studybiochemical reaction; differential gene expression; DSML2: Proof-of-concept: Data science output has been formulated, implemented, and tested for one domain/problem; graph neural network; healthy tissue; human reactome; molecular disease study; pathway enrichment analysis; reaction network;Article

Sustainable Development Goals

SDG 0: Good health and well-being