exRNA-eCLIP intersection analysis reveals a map of extracellular RNA binding proteins and associated RNAs across major human biofluids and carriers is a dataset published in Cell Genomics (2023). On theSindex it has a DataRank of 0.671, placing it in the top 29.8% of the data-sharing corpus. It has been cited 19 times, with 13 citing works in its 1-hop citation network. Its calibrated FAIR score is 65/100.
Ranks in the top 30% for downstream scientific impact
Linked data & code
DataRank reads this dataset's downstream impact straight off the citation graph — no black box, no proprietary weighting. How is this computed?
FAIR checklist signals are shown for context only and do not affect DataRank scoring.
Full FAIR picture · advisory
The headline score is computed from the scored criteria — the fact-shaped checks (a repository, an accession, a licence) that two independent models agree on. The advisory criteria below are real FAIR guidance but rest on judgment calls that models read differently, so they inform without moving the number.
“All generated exRNA/RBP intersect data are available via the exRNA atlas: https://www.exrna-atlas.org”
The only identifier for the data is a URL (exRNA Atlas link), not a persistent identifier scheme.
RDA-F1-01D — FAIR Data Maturity Model: 'Data is identified by a persistent identifier' (priorit · RDA-F1-02D — FAIR Data Maturity Model: 'Data is identified by a globally unique identifier' · FsF-F1-02D — F-UJI/FAIRsFAIR: 'Data is assigned a persistent identifier'
“All generated exRNA/RBP intersect data are available via the exRNA atlas: https://www.exrna-atlas.org”
The exRNA Atlas is a named data repository that holds the data. [majority verdict 'yes' (3/5 passes agreed)]
RDA-F4-01M — FAIR Data Maturity Model: metadata is offered so it can be harvested and indexed ( · NIH DMS Policy Element 4 (NOT-OD-21-014) — name the repository where data will be archived · NSTC Desirable Characteristics of Data Repositories (2022) — 'Long-Term Sustainability', 'Reten
“All generated exRNA/RBP intersect data are available via the exRNA atlas: https://www.exrna-atlas.org”
The dataset's identifier (a URL) appears only in the body text, not as a reference-list entry.
FORCE11 Joint Declaration of Data Citation Principles (2014) — data should be cited as a first- · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes · FsF-F3-01M — F-UJI: 'Metadata includes the identifier of the data it describes'
Advisory · not in the published score
“All generated exRNA/RBP intersect data are available via the exRNA atlas: https://www.exrna-atlas.org in the Post Processed Results Files and are publicly available as of the date of publication.”
The statement points at a repository record with a persistent link [majority verdict 'yes' (4/5 passes agreed)]
Colavizza, Hrynaszkiewicz, Staden, Whitaker & McGillivray (2020), 'The citation advantage of li · Springer Nature research data policy — Data Availability Statements: standard statement templat · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes
“endogenousAlignments_genome_Aligned.bedgraph.intersect_RBP_all_combined.bed.xz (CORE RESULTS) – This archive has files that show where a single sample binds across all RBP regions.”— not found in the paper; verdict downgraded
The STAR Methods section itemises the deposited files and their contents. [downgraded to 'partial' — no verifiable quote from the paper] [majority verdict 'partial' (3/5 passes agreed)]
RDA-F2-01M — 'Rich metadata is provided to allow discovery' (priority Essential) · FsF-F2-01M — F-UJI: 'Metadata includes descriptive core elements to support data findability' · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data'
“All generated exRNA/RBP intersect data are available via the exRNA atlas: https://www.exrna-atlas.org in the Post Processed Results Files and are publicly available as of the date of publication.”
The text gives a route to the data with no stated precondition.
RDA-A1.1-01D — 'Data is accessible through a free access protocol' · FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · NSTC Desirable Characteristics of Data Repositories (2022) — 'Free and Easy Access'
Advisory · not in the published score
“publicly available as of the date of publication”
The paper states the data are publicly available, which is an explicit access-level label.
FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · RDA-A1-01M — metadata contains information to enable the user to get access to the data · COAR Controlled Vocabularies — Access Rights v1.0 (open / embargoed / restricted / metadata-onl
“publicly available as of the date of publication”
The data are human-subject biofluids but are openly available with no gatekeeper named, so the paper does not name any gatekeeper.
NIH Genomic Data Sharing Policy (NOT-OD-14-124) — controlled-access via a Data Access Committee · RDA-A1.2-01D — 'Data is accessible through an access protocol that supports authentication and · NIH DMS Policy Element 5 (NOT-OD-21-014) — Access, Distribution, or Reuse Considerations (conse
“publicly available as of the date of publication”
The paper states when the data become available but says nothing about how long they will persist.
NIH DMS Plan Element 4 (NOT-OD-21-014) — Data Preservation, Access, and Associated Timelines · NSTC Desirable Characteristics (2022), Organizational Infrastructure: 'Retention Policy' · RDA-A2-01M — 'Metadata is guaranteed to remain available after data is no longer available'
“bedGraphs”— not found in the paper; verdict downgraded
The paper names bedGraph, an open, community-standard format. [downgraded to 'partial' — no verifiable quote from the paper] [majority verdict 'partial' (3/5 passes agreed)]
FsF-R1.3-02D — F-UJI: 'Data is available in a file format recommended by the target research co · RDA-R1.3-02D — data is expressed in a machine-understandable community standard · RDA-I1-01D — data uses a knowledge representation expressed in a standardised format
Advisory · not in the published score
No data or metadata community standard is named for the data; only generic resources like Gencode are mentioned.
RDA-R1.3-01M — 'Metadata complies with a community standard' (priority Essential) · RDA-R1.3-01D — 'Data complies with a community standard' · RDA-I2-01M — '(Meta)data use vocabularies that follow FAIR principles'
“https://www.encodeproject.org/encore-matrix/?type=Experiment&status=released&internal_tags=ENCORE”— not found in the paper; verdict downgraded
The paper provides a URL identifier for the ENCODE eCLIP data that the study used. [downgraded to 'no' — no verifiable quote from the paper] [majority verdict 'no' (4/5 passes agreed)]
RDA-I3-01M — '(meta)data include references to other (meta)data' · RDA-I3-03M — 'metadata includes qualified references to other metadata' · FsF-I3-01M — F-UJI: 'Metadata includes links between the data and its related entities'
No licence for the data is mentioned; the CC BY licence applies only to the article.
RDA-R1.1-01M — 'Metadata includes information about the licence under which the data can be reu · RDA-R1.1-02M — 'Metadata refers to a standard reuse licence' · RDA-R1.1-03M — 'Metadata refers to a machine-understandable reuse licence'
“publicly available as of the date of publication”
The paper provides a date (publication date) but no version token for the data.
DataCite Metadata Schema 4.6 — the 'Version' property · RDA-R1.2-01M — provenance information (which version was used is provenance) · NSTC Desirable Characteristics of Data Repositories (2022) — 'Provenance', 'Retention Policy'
“All original code has been deposited at Github and Zenodo: https://doi.org/10.5281/zenodo.7706896”
The paper provides a machine-resolvable locator (Zenodo DOI) for the code.
NIH DMS Policy Element 2 (NOT-OD-21-014) — 'Related Tools, Software and/or Code' · FAIR4RS Principles v1.0 (Chue Hong et al., 2022; RDA/FORCE11/ReSA) — FAIR Principles for Resear · FORCE11 Software Citation Principles (Smith, Katz & Niemeyer, 2016, PeerJ CS 2:e86)
“This publication was supported in part by NIH common fund 1UG3TR002881-01, 1U54DA036134-01, 1U54DA049098-01, 1U54DA049098-01S1, 1UH3TR002881, and OT2OD030547-01S1”
The paper lists specific grant numbers for the funding.
DataCite Metadata Schema 4.6 — 'FundingReference' property (funderName, funderIdentifier, award · Crossref Funder Registry — canonical funder identifiers for funding metadata · RDA-F2-01M — rich metadata provided to allow discovery (funding is part of the descriptive reco
Advisory · not in the published score
“Samtools 1.3.1”
The paper names specific software used to produce the data [majority verdict 'yes' (4/5 passes agreed)]
RDA-R1.2-01M — 'Metadata includes provenance information according to community- specific standa · FsF-R1.2-01M — F-UJI: 'Metadata includes provenance information about data creation or generati · W3C PROV-O (W3C Recommendation, 2013) — the entity/activity/agent model of provenance
“d endogenousAlignments_genome_Aligned.bedgraph.intersect_RBP_all_combined.bed.xz (CORE RESULTS) B This archive has files that show where a single sample binds across all RBP regions.”
The file descriptions are inside the article, not as a separate documentation object shipped with the data. [majority verdict 'partial' (3/5 passes agreed)]
RDA-R1-01M — '(Meta)data are richly described with a plurality of accurate and relevant attribu · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data' · NIH DMS Policy Element 3 (NOT-OD-21-014) — Standards (documentation and metadata to accompany t
Calibrated FAIR score — a parallel quality metric, independent of the DataRank citation score. See the full evaluation →
Base Score Contribution
0.449
From this paper's citation signal
Citation Network Contribution
0.221
From 11 citing papers with measurable signal
Ranked by each citer's contribution to N(p) — log1p(Cq) divided by its reference count — out of 13 citers.
National Institutes of Health
Grant: 1U54DA036134-01
SOC Core
National Institutes of Health
Grant: 1U54DA049098-01S1
National Institutes of Health
Grant: 4UH3CA241703-03
P.R.I.S.M: Purification of exRNA by Immuno-capture and Sorting using Microfluidic
National Institutes of Health
Grant: 5UG3TR002881-02
Integrative, multi-parametric characterization of the EV surface protein and nucleic acid landscape by nano-flow and sorting cytometry
National Institutes of Health
Grant: OT2OD030547-01S1
Cancer Prevention and Research Institute of Texas
Grant: RR200040
NCI NIH HHS
Grant: UH3 CA241703
NIH HHS
Grant: OT2 OD030547
NIDDK NIH HHS
Grant: P30 DK058404
NIDA NIH HHS
Grant: U54 DA049098
NCI NIH HHS
Grant: UG3 CA241685
NCATS NIH HHS
Grant: UG3 TR002881
NIDA NIH HHS
Grant: U54 DA036134
NCATS NIH HHS
Grant: UH3 TR002881
NCI NIH HHS
Grant: R35 CA197570
NCI NIH HHS
Grant: UH3 CA241685
National Institutes of Health
Grant: 1OT2OD030547-01
GENOMIC INDEXING OF COMMON FUND DATASETS
National Institutes of Health
Grant: 1UG3TR002881-01
Integrative, multi-parametric characterization of the EV surface protein and nucleic acid landscape by nano-flow and sorting cytometry
National Institutes of Health
Grant: 1U54DA049098-01
DATA MANAGEMENT AND RESOURCE REPOSITORY FOR THE exRNA ATLAS PHASE II
Baylor College of Medicine
National Center of Competence in Research Chemical Biology
NCCR Catalysis
FWCI
1.74
Citation Percentile
0.8%
Citation Trend
Fields of Study
Keywords