Long-read sequencing of an advanced cancer cohort resolves rearrangements, unravels haplotypes, and reveals methylation landscapes is a dataset published in Cell Genomics (2024). On theSindex it has a DataRank of 0.822, placing it in the top 24.5% of the data-sharing corpus. It has been cited 31 times, with 26 citing works in its 1-hop citation network. Its calibrated FAIR score is 67/100.
Ranks in the top 25% for downstream scientific impact
DataRank reads this dataset's downstream impact straight off the citation graph — no black box, no proprietary weighting. How is this computed?
FAIR checklist signals are shown for context only and do not affect DataRank scoring.
Full FAIR picture · advisory
The headline score is computed from the scored criteria — the fact-shaped checks (a repository, an accession, a licence) that two independent models agree on. The advisory criteria below are real FAIR guidance but rest on judgment calls that models read differently, so they inform without moving the number.
“Genomic and transcriptomic sequence datasets for long-read and short-read platforms have been deposited at the European Genome-Phenome Archive (EGA; https://ega-archive.org/ ) as part of study EGA: EGAS00001001159, as listed in the key resources table , with accession numbers as listed in Table S1 .”
The paper provides a persistent identifier string (EGAS00001001159) in the EGA scheme, which is a registered repository accession pattern.
RDA-F1-01D — FAIR Data Maturity Model: 'Data is identified by a persistent identifier' (priorit · RDA-F1-02D — FAIR Data Maturity Model: 'Data is identified by a globally unique identifier' · FsF-F1-02D — F-UJI/FAIRsFAIR: 'Data is assigned a persistent identifier'
“European Genome-Phenome Archive (EGA)”— not found in the paper; verdict downgraded
The paper names the European Genome-Phenome Archive (EGA) as the repository holding the study's data. [downgraded to 'partial' — no verifiable quote from the paper] [majority verdict 'partial' (4/5 passes agreed)]
RDA-F4-01M — FAIR Data Maturity Model: metadata is offered so it can be harvested and indexed ( · NIH DMS Policy Element 4 (NOT-OD-21-014) — name the repository where data will be archived · NSTC Desirable Characteristics of Data Repositories (2022) — 'Long-Term Sustainability', 'Reten
“Genomic and transcriptomic sequence datasets for long-read and short-read platforms have been deposited at the European Genome-Phenome Archive (EGA; https://ega-archive.org/ ) as part of study EGA: EGAS00001001159, as listed in the key resources table , with accession numbers as listed in Table S1 .”
The dataset identifier (EGAS00001001159) appears only in the body text of the Data Availability Statement, not as a reference-list entry.
FORCE11 Joint Declaration of Data Citation Principles (2014) — data should be cited as a first- · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes · FsF-F3-01M — F-UJI: 'Metadata includes the identifier of the data it describes'
Advisory · not in the published score
“Genomic and transcriptomic sequence datasets for long-read and short-read platforms have been deposited at the European Genome-Phenome Archive (EGA; https://ega-archive.org/ ) as part of study EGA: EGAS00001001159, as listed in the key resources table , with accession numbers as listed in Table S1 .”
The data-availability statement points to repository records with accessions (EGA study and GEO series), which is Colavizza category 3.
Colavizza, Hrynaszkiewicz, Staden, Whitaker & McGillivray (2020), 'The citation advantage of li · Springer Nature research data policy — Data Availability Statements: standard statement templat · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes
“The Long-Read Personalized OncoGenomics (POG) dataset comprises a cohort of 189 patient tumors and 41 matched normal samples sequenced using the Oxford Nanopore Technologies PromethION platform.”
The dataset is described in running prose, not in an itemised inventory section, table, or list. [majority verdict 'partial' (2/5 passes agreed)]
RDA-F2-01M — 'Rich metadata is provided to allow discovery' (priority Essential) · FsF-F2-01M — F-UJI: 'Metadata includes descriptive core elements to support data findability' · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data'
“Other processed data from Long-Read POG, figure source data, and accompanying short-read variants can be downloaded from https://www.bcgsc.ca/downloads/nanopore_pog/ .”
The paper provides a direct download link for processed data with no stated precondition, making the data unconditionally accessible.
RDA-A1.1-01D — 'Data is accessible through a free access protocol' · FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · NSTC Desirable Characteristics of Data Repositories (2022) — 'Free and Easy Access'
Advisory · not in the published score
“Other processed data from Long-Read POG, figure source data, and accompanying short-read variants can be downloaded from https://www.bcgsc.ca/downloads/nanopore_pog/ .”
The paper describes an access action (a download link) but does not label the access level with a standard term like 'open access' or 'restricted access'. [majority verdict 'partial' (3/5 passes agreed)]
FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · RDA-A1-01M — metadata contains information to enable the user to get access to the data · COAR Controlled Vocabularies — Access Rights v1.0 (open / embargoed / restricted / metadata-onl
“Any additional information required to reanalyze the data reported in this paper is available from the lead contact upon request.”
The only gatekeeper named for additional data access is the lead contact, a natural person, and no institutional gatekeeper is specified for the deposited data. [majority verdict 'partial' (3/5 passes agreed)]
NIH Genomic Data Sharing Policy (NOT-OD-14-124) — controlled-access via a Data Access Committee · RDA-A1.2-01D — 'Data is accessible through an access protocol that supports authentication and · NIH DMS Policy Element 5 (NOT-OD-21-014) — Access, Distribution, or Reuse Considerations (conse
No sentence in the paper states when the data become available or how long they persist, beyond the act of deposition. [majority verdict 'no' (3/5 passes agreed)]
NIH DMS Plan Element 4 (NOT-OD-21-014) — Data Preservation, Access, and Associated Timelines · NSTC Desirable Characteristics (2022), Organizational Infrastructure: 'Retention Policy' · RDA-A2-01M — 'Metadata is guaranteed to remain available after data is no longer available'
“Long-read sequence bams”
The key resources table lists 'Long-read sequence bams', which is an open community-standard format (BAM). [majority verdict 'yes' (4/5 passes agreed)]
FsF-R1.3-02D — F-UJI: 'Data is available in a file format recommended by the target research co · RDA-R1.3-02D — data is expressed in a machine-understandable community standard · RDA-I1-01D — data uses a knowledge representation expressed in a standardised format
Advisory · not in the published score
No community-standard data/metadata schema, checklist, or ontology (e.g., MIAME, MINSEQE, GO) is named for the data. [majority verdict 'no' (2/5 passes agreed)]
RDA-R1.3-01M — 'Metadata complies with a community standard' (priority Essential) · RDA-R1.3-01D — 'Data complies with a community standard' · RDA-I2-01M — '(Meta)data use vocabularies that follow FAIR principles'
“GEO: GSE186458”
The paper gives identifiers for third-party resources it uses: GEO accession GSE186458 for normal tissue data and a DOI for the code.
RDA-I3-01M — '(meta)data include references to other (meta)data' · RDA-I3-03M — 'metadata includes qualified references to other metadata' · FsF-I3-01M — F-UJI: 'Metadata includes links between the data and its related entities'
No reuse license is stated for the data; the CC BY license applies only to the article, not the dataset.
RDA-R1.1-01M — 'Metadata includes information about the licence under which the data can be reu · RDA-R1.1-02M — 'Metadata refers to a standard reuse licence' · RDA-R1.1-03M — 'Metadata refers to a machine-understandable reuse licence'
No version token or date is given to identify the snapshot of the data released or used.
DataCite Metadata Schema 4.6 — the 'Version' property · RDA-R1.2-01M — provenance information (which version was used is provenance) · NSTC Desirable Characteristics of Data Repositories (2022) — 'Provenance', 'Retention Policy'
“Code used to generate figures in this article is available in containerized, reproducible form at https://github.com/bcgsc/long_read_pog ( https://doi.org/10.5281/zenodo.13180584 ).”
The paper provides a machine-resolvable locator (GitHub URL and Zenodo DOI) for the study's own code.
NIH DMS Policy Element 2 (NOT-OD-21-014) — 'Related Tools, Software and/or Code' · FAIR4RS Principles v1.0 (Chue Hong et al., 2022; RDA/FORCE11/ReSA) — FAIR Principles for Resear · FORCE11 Software Citation Principles (Smith, Katz & Niemeyer, 2016, PeerJ CS 2:e86)
“projects 202SEQ to M.A.M. and S.J.M.J., 212SEQ to M.A.M. and S.J.M.J., and 12002 GBC to M.A.M., S.J.M.J., and J.L”
The paper gives specific grant numbers (e.g., 202SEQ, 212SEQ) attached to named funders (Genome Canada, Genome BC). [majority verdict 'yes' (4/5 passes agreed)]
DataCite Metadata Schema 4.6 — 'FundingReference' property (funderName, funderIdentifier, award · Crossref Funder Registry — canonical funder identifiers for funding metadata · RDA-F2-01M — rich metadata provided to allow discovery (funding is part of the descriptive reco
Advisory · not in the published score
“DNA libraries were loaded in R9.4.1 pore flow cells on PromethION 24 instrument running software version 19.06.9 (MinKNOW GUI v4.0.23).”
The paper names specific instruments (PromethION 24), chemistry (R9.4.1), and software versions used to produce the data.
RDA-R1.2-01M — 'Metadata includes provenance information according to community- specific standa · FsF-R1.2-01M — F-UJI: 'Metadata includes provenance information about data creation or generati · W3C PROV-O (W3C Recommendation, 2013) — the entity/activity/agent model of provenance
“Table S1. Samples in the Long-Read POG cohort, related to Figure 1”
Variable-level definitions are provided inside the article (Table S1), but no documentation object is said to accompany the data deposit. [majority verdict 'partial' (4/5 passes agreed)]
RDA-R1-01M — '(Meta)data are richly described with a plurality of accurate and relevant attribu · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data' · NIH DMS Policy Element 3 (NOT-OD-21-014) — Standards (documentation and metadata to accompany t
Calibrated FAIR score — a parallel quality metric, independent of the DataRank citation score. See the full evaluation →
Base Score Contribution
0.520
From this paper's citation signal
Citation Network Contribution
0.303
From 17 citing papers with measurable signal
Ranked by each citer's contribution to N(p) — log1p(Cq) divided by its reference count — out of 26 citers.
Fondation canadienne pour l’innovation
Grant: 35444
Fondation canadienne pour l’innovation
Grant: 20070
Fondation canadienne pour l’innovation
Grant: 30981
Fondation canadienne pour l’innovation
Grant: 40104
Fondation canadienne pour l’innovation
Grant: 30198
Fondation canadienne pour l’innovation
Grant: 42362
Fondation canadienne pour l’innovation
Grant: 33408
Canadian Institutes of Health Research
Grant: FDN 143288
Genome British Columbia
Grant: 202SEQ
Genome British Columbia
Grant: 12002 GBC
Genome British Columbia
Grant: 212SEQ
Canadian Cancer Society Research Institute
Grant: 707104
Canadian Cancer Society Research Institute
Grant: 174705
Canadian Institutes of Health Research
Grant: unidentified
unidentified
FWCI
5.46
Citation Percentile
1.0%
Citation Trend
Fields of Study
MeSH Terms
Keywords