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Computational workflow for integrative analyses of DNA replication timing, epigenomic, and transcriptomic data

STAR Protocols(2022)10.1016/j.xpro.2022.101827Source: DataRank Database

Computational workflow for integrative analyses of DNA replication timing, epigenomic, and transcriptomic data is a research paper published in STAR Protocols (2022). On theSindex it has a DataRank of 0. It has been cited 3 times.

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Open Access3 citations

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datarank_citation_only_1hop_v6· scope data_onlyMethodology

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Enrichment:Funding (9 grants)Impact (FWCI 0.16)OA: goldTopics (45)IDs (PubMed, PMC, OpenAlex)Annotations (2)

FAIR Checklist

Context only (not used in score)

Findable (1/2)

Has DOI

Accessible (1/2)

Open Access

Interoperable (0/2)

Reusable (0/3)

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Authors (4)

Capucine Van Rechem ORCID,Johnathan R. Whetstine ORCID,Ruslan I. Sadreyev ORCID,Fei Ji ORCID

Live enrichment

PubMed:36386876 PMC:PMC9647704 OpenAlex:https://openalex.org/W4308567697

National Cancer Institute

Grant: P30 CA006927

NIGMS

Grant: R01GM097360

National Institute of Diabetes and Digestive and Kidney Diseases

Grant: P30 DK040561

NIGMS NIH HHS

Grant: R35 GM144131

National Institutes of Health

Grant: 5P30CA006927-49

Transgenic Mouse

National Institutes of Health

Grant: 5P30DK040561-23

Nutrition Obesity Research Center at Harvard

National Institutes of Health

Grant: 5R01GM097360-03

Understanding the Role of Histone Demethylases and Heterochromatin in Cell Cycle

Daiichi-Sankyo

National Institutes of Health

FWCI

0.16

Citation Percentile

0.4%

Citation Trend

2024

2025

2026

goldLicense: cc-by-nc-nd

journalhttps://www.sciencedirect.com/science/article/pii/S2666166722007079/pdf

publisherhttps://www.sciencedirect.com/science/article/pii/S2666166722007079/pdf

publisherhttps://api.elsevier.com/content/article/PII:S2666166722007079?httpAccept=text/xml

publisherhttps://api.elsevier.com/content/article/PII:S2666166722007079?httpAccept=text/plain

journalhttps://doi.org/10.1016/j.xpro.2022.101827

Fields of Study

DNA Repair MechanismsGenomics and Chromatin DynamicsEpigenetics and DNA Methylation0301 basic medicine0206 medical engineering02 engineering and technology03 medical and health sciencesEpigenomicsDNA Replication TimingTranscriptomeWorkflowChromatin

MeSH Terms

ChromatinDNA Replication TimingWorkflowEpigenomicsTranscriptome

Keywords

EpigenomicsChromatinComputational biologyBiologyWorkflowRNA-SeqChIP-sequencingComputer scienceCell cycleDNA replicationTranscriptomeGeneticsDNAGeneGene expressionDNA methylationChromatin remodelingDatabaseSequencingSequence analysisBioinformaticsGenomicsRnaseqChipseqScience (General)DNA Replication TimingQ1-390Protocol