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Protocol for analyzing tRNA-derived ncRNAs from small RNA-seq data using tRFUniverse functional analyses

STAR Protocols(2025)10.1016/j.xpro.2025.103884Source: DataRank Database

Protocol for analyzing tRNA-derived ncRNAs from small RNA-seq data using tRFUniverse functional analyses is a research paper published in STAR Protocols (2025). On theSindex it has a DataRank of 0.

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Enrichment:Funding (6 grants)Impact (FWCI 0.00)OA: goldTopics (46)IDs (PubMed, PMC, OpenAlex)Annotations (2)

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Accessible (1/2)

Open Access

Interoperable (0/2)

Reusable (0/3)

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Authors (5)

Giovanni Nigita ORCID,Alfredo Ferro ORCID,Salvatore Alaimo ORCID,Alfredo Pulvirenti ORCID,Alessandro La Ferlita ORCID

Live enrichment

PubMed:40503934 PMC:PMC12182353 OpenAlex:https://openalex.org/W4411182864

National Institutes of Health

Grant: R21CA287180

National Institutes of Health

Grant: R21CA277525

European Commission

Grant: B63C22000680007

American Lung Association

Grant: LCDA-922902

National Institutes of Health

Grant: 1R21CA287180-01A1

isomiRGate: a comprehensive gateway for studying the canonical and modified microRNAomes in Cancer

National Institutes of Health

Grant: 1R21CA277525-01

The Role of Non-Coding RNA Editing in MET Signaling in NSCLC

FWCI

0.00

Citation Percentile

0.1%

goldLicense: cc-by-nc-nd

journalhttps://doi.org/10.1016/j.xpro.2025.103884

publisherhttps://doi.org/10.1016/j.xpro.2025.103884

publisherhttps://api.elsevier.com/content/article/PII:S2666166725002904?httpAccept=text/xml

publisherhttps://api.elsevier.com/content/article/PII:S2666166725002904?httpAccept=text/plain

repositoryhttps://pubmed.ncbi.nlm.nih.gov/40503934

Fields of Study

RNA modifications and cancerCancer-related molecular mechanisms researchGenomics and Phylogenetic StudiesMedicineBiologyComputer Science0206 medical engineering02 engineering and technologyRNA, TransferHumansRNA, Small UntranslatedRNA-SeqSequence Analysis, RNALung NeoplasmsSoftware

MeSH Terms

RNA-SeqHumansLung NeoplasmsRNA, TransferSoftwareSequence Analysis, RNARNA, Small Untranslated

Keywords

Transfer RNAComputational biologyRNA-SeqProtocol (science)RNAComputer scienceBiologyGeneticsMedicineGeneTranscriptomeGene expressionCancerSequence analysisBioinformaticsGenomicsRnaseqLung NeoplasmsRNA, TransferSequence Analysis, RNAProtocolHumansRNA, Small UntranslatedSoftware

Protocol for analyzing tRNA-derived ncRNAs from small RNA-seq data using tRFUniverse functional analyses

FAIR Checklist

Authors (5)

Funding (6 grants)

Impact

Open Access

Topics

Annotations (Europe PMC)