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ShapeMetrics: A userfriendly pipeline for 3D cell segmentation and spatial tissue analysis

Developmental Biology(2020)10.1016/j.ydbio.2020.02.003Source: DataRank Database

ShapeMetrics: A userfriendly pipeline for 3D cell segmentation and spatial tissue analysis is a research paper published in Developmental Biology (2020). On theSindex it has a DataRank of 0. It has been cited 18 times.

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0DataRank · unranked

Scored on demand from live citation data

Open Access18 citations

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›Methodology & internals

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Pipeline:MetadataData-paper checkEnrichmentCitation networkScoring

Enrichment:Funding (12 grants)OA: hybridTopics (36)IDs (PubMed, PMC)

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Findable (1/2)

Has DOI

Accessible (1/2)

Open Access

Interoperable (0/2)

Reusable (0/3)

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Authors (6)

Ceren Pajanoja ORCID,Kristen Kurtzeborn ORCID,Jenny Hsin ORCID,Satu Kuure ORCID,Laura Kerosuo ORCID

Live enrichment

PubMed:32061886 PMC:PMC9624194

Intramural NIH HHS

Grant: ZIA DE000748

Intramural NIH HHS

Grant: ZIC DE000750

National Institutes of Health

Grant: 1ZIADE000748-04

Neural Crest Development and Disease

National Institutes of Health

Grant: 1ZICDE000750-03

Imaging Core

National Institute of Dental and Craniofacial Research

Lasten Syöpäsäätiö Väreen

Sigrid Juséliuksen Säätiö

U.S. Department of Health and Human Services

Academy of Finland

National Institutes of Health

Helsingin Yliopisto

Suomen Kulttuurirahasto

hybridLicense: CC BY NC ND

publisherhttps://api.elsevier.com/content/article/PII:S0012160620300464?httpAccept=text/xml

publisherhttps://api.elsevier.com/content/article/PII:S0012160620300464?httpAccept=text/plain

Unpaywallhttps://doi.org/10.1016/j.ydbio.2020.02.003

Europe_PMChttps://europepmc.org/articles/PMC9624194

Europe_PMChttps://europepmc.org/articles/PMC9624194?pdf=render

Fields of Study

0301 basic medicine03 medical and health sciences0303 health sciences

MeSH Terms

AnimalsHumansImaging, Three-DimensionalMicroscopyComputational BiologyAlgorithmsImage Processing, Computer-AssistedSoftwareSpatial Analysis

Keywords

Spatial localizationMatlabCell sizeSingle Cell AnalysisCell ShapeTissue AnalysisIlastik3D Cell SegmentationCell Segmentation PipelineUser-friendly CodeShapemetricsCell Morphology AnalysisArticleImaging, Three-DimensionalImage Processing, Computer-AssistedAnimalsHumansBiochemistry, cell and molecular biologyMicroscopySpatial AnalysisEMBRYOComputational BiologyAlgorithmsSoftware