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AMBERff at Scale: Multimillion-Atom Simulations with AMBER Force Fields in NAMD

Journal of Chemical Information and Modeling(2024)10.1021/acs.jcim.3c01648Source: DataRank Database

AMBERff at Scale: Multimillion-Atom Simulations with AMBER Force Fields in NAMD is a research paper published in Journal of Chemical Information and Modeling (2024). On theSindex it has a DataRank of 0. It has been cited 18 times.

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Open Access18 citations

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›Methodology & internals

datarank_citation_only_1hop_v6· scope data_onlyMethodology

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Enrichment:Funding (16 grants)Impact (FWCI 3.02)OA: hybridTopics (22)IDs (PubMed, OpenAlex)

FAIR Checklist

Context only (not used in score)

Findable (1/2)

Has DOI

Accessible (1/2)

Open Access

Interoperable (0/2)

Reusable (0/3)

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Authors (4)

Peter Eugene Jones ORCID,J. C. Phillips ORCID,Jodi A. Hadden‐Perilla ORCID,Santiago Antolínez ORCID

Live enrichment

PubMed:38176097 OpenAlex:https://openalex.org/W4390574025

University of Delaware Research Foundation

Grant: 21A01009

National Institutes of Health

Grant: S10OD028725

National Institutes of Health

Grant: P20GM103446

National Science Foundation

Grant: 2138307

Track 3: COre National Ecosystem for CyberinfrasTructure (CONECT)

National Science Foundation

Grant: BIO-230085

National Science Foundation

Grant: CBET-2232718

National Science Foundation

Grant: MCB-23064

National Science Foundation

Grant: 2138286

Track 2: Customized Multi-tier Assistance, Training, and Computational Help (MATCH) for End User ACCESS to CI

National Science Foundation

Grant: 2138296

ACO: An Open CI Ecosystem to Advance Scientific Discovery (OpenCI)

National Science Foundation

Grant: 2137603

Track 4: Advanced CI Coordination Ecosystem: Monitoring and Measurement Services

National Science Foundation

Grant: OAC-1919839

National Science Foundation

Grant: 2138259

Track 1: ACCESS Resource Allocations Marketplace and Platform Services (RAMPS)

National Institutes of Health

Grant: 1S10OD028725-01A1

Data Management and Storage System for Shared Resource Facilities

National Science Foundation

Grant: 2232718

Collaborative Research: Room-temperature Superfluorescence in Multi-fluorophore Protein Cages and Its Origins

National Institutes of Health

Grant: 5P20GM103446-15

Bioinformatics Core

National Science Foundation

Grant: 1919839

MRI: Acquisition of a Big Data and High Performance Computing System to Catalyze Delaware Research and Education

FWCI

3.02

Citation Percentile

0.9%

Citation Trend

2024

2025

2026

hybridLicense: cc-by

journalhttps://doi.org/10.1021/acs.jcim.3c01648

publisherhttps://doi.org/10.1021/acs.jcim.3c01648

publisherhttps://pubs.acs.org/doi/pdf/10.1021/acs.jcim.3c01648

repositoryhttps://pubmed.ncbi.nlm.nih.gov/38176097

repositoryhttps://www.ncbi.nlm.nih.gov/pmc/articles/10806814

Fields of Study

Protein Structure and DynamicsBacteriophages and microbial interactionsRNA and protein synthesis mechanisms0301 basic medicine03 medical and health sciences0103 physical sciences01 natural sciences

MeSH Terms

Molecular Dynamics Simulation

Keywords

Molecular dynamicsMassively parallelAtom (system on chip)Scale (ratio)Force field (fiction)Point (geometry)Computer scienceStatistical physicsPhysicsComputational scienceParallel computingMathematicsQuantum mechanicsArtificial intelligence