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Novel Insights into Quantitative Proteomics from an Innovative Bottom-Up Simple Light Isotope Metabolic (bSLIM) Labeling Data Processing Strategy

Journal of Proteome Research(2021)10.1021/acs.jproteome.0c00478Source: DataRank Database

Novel Insights into Quantitative Proteomics from an Innovative Bottom-Up Simple Light Isotope Metabolic (bSLIM) Labeling Data Processing Strategy is a research paper published in Journal of Proteome Research (2021). On theSindex it has a DataRank of 0. It has been cited 7 times.

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Open Access7 citations

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Enrichment:Funding (3 grants)Impact (FWCI 0.73)OA: hybridTopics (64)Linked Datasets (2)DataCite Reuse (2)IDs (PubMed, PMC, OpenAlex)Annotations (1)

FAIR Checklist

Context only (not used in score)

Findable (2/2)

Has DOI
Indexed in repositories

Accessible (1/2)

Open Access

Interoperable (2/2)

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Reusable (0/3)

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Authors (10)

Gelio Alves ORCID,Hendrik Weisser ORCID,Laurent Lignières ORCID,Samuel Terrier ORCID,Lilian Yang-Crosson

Live enrichment

PubMed:33573382 PMC:PMC8459934 OpenAlex:https://openalex.org/W3128894421

Agence Nationale de la Recherche

Grant: ANR-18-CE44-0014

High performance MS-based proteomics by reducing stable isotopes complexity in vivo

Intramural NIH HHS

Grant: ZIA LM092404

Centre de Recherches Interdisciplinaires

FWCI

0.73

Citation Percentile

0.6%

Citation Trend

2022

2023

hybridLicense: cc-by-nc-nd

journalhttps://doi.org/10.1021/acs.jproteome.0c00478

publisherhttps://doi.org/10.1021/acs.jproteome.0c00478

publisherhttps://pubs.acs.org/doi/pdf/10.1021/acs.jproteome.0c00478

repositoryhttps://pubmed.ncbi.nlm.nih.gov/33573382

repositoryhttp://europepmc.org/pmc/articles/PMC8459934

Fields of Study

Advanced Proteomics Techniques and ApplicationsMass Spectrometry Techniques and ApplicationsMitochondrial Function and Pathology0301 basic medicine03 medical and health sciences

MeSH Terms

Amino Acid SequenceIsotope LabelingMass SpectrometryProteomeProteomics

Keywords

Stable isotope labeling by amino acids in cell cultureIsotopic labelingProteomicsProteomeQuantitative proteomicsChemistrySaccharomyces cerevisiaeMass spectrometryComputational biologyLabel-free quantificationAmino acidIsobaric labelingBiological systemComputer scienceYeastWorkflowBiochemistryChromatographyBiologyDatabaseGeneKnimeData Processing WorkflowOpenmsIn Vivo Metabolic Labeling12CLight Carbon Isotopebottom-up proteomics dataPhysiologyImmunologyBiophysicsbSLIMSLIM-labelingprotein sequence coverageGeneticsmoduleAmino Acid SequenceMolecular Biology12 CData Processing StrategytoolMetrics & More Article Recommendations In vivo metabolic labelingLight Isotope Metabolic12 C-labeled peptidesIsotope LabelingmethodMedicine[SDV.BBM.GTP] Life Sciences [q-bio]/Biochemistry, Molecular Biology/Genomics [q-bio.GN]acidstrategymass spectrometry experiments12 C abundanceSLIMdata processing

bSLIM Quantification Minora KNIME 4.2.3

10.5281/zenodo.4467828Zenodo

bSLIM Quantification Minora KNIME 4.2.3

10.5281/zenodo.4467829Zenodo

Novel Insights into Quantitative Proteomics from an Innovative Bottom-Up Simple Light Isotope Metabolic (bSLIM) Labeling Data Processing Strategy

FAIR Checklist

Authors (10)

Funding (3 grants)

Impact

Open Access

Topics

Linked Datasets (2)

Annotations (Europe PMC)