Pilot corpus: NIH-funded biomedical datasets. Any DOI can be scored on demand — network effects sharpen as coverage grows.

Expanded palette of RNA base editors for comprehensive RBP-RNA interactome studies

Nature Communications(2024)10.1038/s41467-024-45009-4Source: DataRank Database

Expanded palette of RNA base editors for comprehensive RBP-RNA interactome studies is a research paper published in Nature Communications (2024). On theSindex it has a DataRank of 0.651. It has been cited 24 times, with 19 citing works in its 1-hop citation network.

N/A

0.651DataRank · unranked

Scored on demand from live citation data

Deposits data Open Access24 citations · 19 citing works in its network

Download PDF

Cite:

Linked data & code

uniprot

Data availability

Repositories this paper deposited data in (declared in PubMed).

GEOGSE232520 GSE215252

DataRank reads this dataset's downstream impact straight off the citation graph — no black box, no proprietary weighting. How is this computed?

›Methodology & internals

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Pipeline:MetadataData-paper checkEnrichmentCitation networkScoring

Enrichment:Funding (21 grants)OA: goldTopics (18)IDs (PubMed, PMC)Annotations (1)

FAIR Checklist

Context only (not used in score)

Findable (1/2)

Has DOI

Accessible (1/2)

Open Access

Interoperable (0/2)

Reusable (0/3)

FAIR checklist signals are shown for context only and do not affect DataRank scoring.

Run a calibrated FAIR evaluation for this paper →

We only score data papers we can read in full — never from an abstract alone.

DataRank Breakdown

Base Score 74%Citation Network 26%

Base Score Contribution

0.483

From this paper's citation signal

Citation Network Contribution

0.168

From 10 citing papers with measurable signal

Learn more about DataRank methodology →

Top 5 citers driving the network score

Ranked by each citer's contribution to N(p) — log1p(C_q) divided by its reference count — out of 19 citers.

LoDEI: a robust and sensitive tool to detect transcriptome-wide differential A-to-I editing in RNA-seq data
Nature Communications202411 citations52 referencesContributes 0.048
Noncanonical target-strand cytosine base editing via engineered Un1Cas12f1 platform
Nature Communications20257 citations73 referencesContributes 0.028
Simultaneous profiling of the RNA targets of two RNA-binding proteins using TRIBE-STAMP
Methods in enzymology on CD-ROM/Methods in enzymology20241 citations26 referencesContributes 0.027
Revealing microRNA regulation in single cells
Trends in Genetics202520 citations123 referencesContributes 0.025
Systematic characterization of the composition and dynamics of processing body-associated mRNAs
Nature Communications20253 citations69 referencesContributes 0.020

Authors (15)

Eric Kofman ORCID,Pratibha Jagannatha ORCID,Evan A. Boyle ORCID,Tao Yu ORCID,Krysten L. Jones ORCID

Live enrichment

PubMed:38287010 PMC:PMC10825223

NHGRI NIH HHS

Grant: R01 HG010646

NIGMS NIH HHS

Grant: T32 GM112584

NHGRI NIH HHS

Grant: U24 HG009889

NHGRI NIH HHS

Grant: U41 HG009889

NIGMS NIH HHS

Grant: K12 GM068524

NHGRI NIH HHS

Grant: R01 HG004659

NINDS NIH HHS

Grant: R01 NS103172

NIMH NIH HHS

Grant: RF1 MH126719

NHGRI NIH HHS

Grant: U24 HG011735

NCI NIH HHS

Grant: T32 CA067754

NIGMS NIH HHS

Grant: R35 GM138317

NHGRI NIH HHS

Grant: R01 HG011864

National Institutes of Health

Grant: 5R01NS103172-03

Therapeutic strategies for microsatellite expansion diseases using RNA-targeting CRISPR/Cas

National Institutes of Health

Grant: 1U24HG011735-01

Genome Technologies Coordinating Center

National Institutes of Health

Grant: 5R01HG004659-08

Functional RNA elements in the human genome

National Institutes of Health

Grant: 5U41HG009889-04

A Comprehensive Functional Map of Human Protein-RNA Interactions

National Institutes of Health

Grant: 5T32GM112584-04

Chemical Biology Interfaces at UC San Diego

National Institutes of Health

Grant: 5R01HG011864-04

STAMP technology to enable single-cell and isoform-sensitive detection of RBP sites

National Institutes of Health

Grant: 2R01HG010646-05

Ultra low-input epigenetic sequencing with combined enzymatic and long-read technologies

National Institutes of Health

Grant: 1RF1MH126719-01A1

Ribo-STAMPEDE: novel tools for molecular profiling of brain cell types

National Institutes of Health

Grant: 3R35GM138317-02S1

Development and Application of New Genome Editing Tools for the Functional Investigation of Genetic Variants of Uncertain Significance

goldLicense: cc-by

publisherhttps://www.nature.com/articles/s41467-024-45009-4.pdf

publisherhttps://www.nature.com/articles/s41467-024-45009-4

repositoryhttps://escholarship.org/content/qt5n96h3v6/qt5n96h3v6.pdf?t=s8a0ye

repositoryhttps://pmc.ncbi.nlm.nih.gov/articles/PMC10825223/pdf/41467_2024_Article_45009.pdf

repositoryhttps://doaj.org/article/8d2fba859be64189bf8bdb600ad90c27

MeSH Terms

RNA-Binding ProteinsRNARNA Processing, Post-TranscriptionalBinding Sites

Keywords

RNA ProcessingBinding SitesScienceHuman GenomeQPost-TranscriptionalRNA-Binding ProteinsBiological SciencesArticle004GeneticsRNABiochemistry and Cell BiologyRNA Processing, Post-Transcriptional