An integrated computational and experimental study to investigate Staphylococcus aureus metabolism is a dataset published in npj Systems Biology and Applications (2020). On theSindex it has a DataRank of 0.777, placing it in the top 25.9% of the data-sharing corpus. It has been cited 25 times, with 17 citing works in its 1-hop citation network. Its calibrated FAIR score is 29/100.
Ranks in the top 26% for downstream scientific impact
Linked data & code
DataRank reads this dataset's downstream impact straight off the citation graph — no black box, no proprietary weighting. How is this computed?
FAIR checklist signals are shown for context only and do not affect DataRank scoring.
Full FAIR picture · advisory
The headline score is computed from the scored criteria — the fact-shaped checks (a repository, an accession, a licence) that two independent models agree on. The advisory criteria below are real FAIR guidance but rest on judgment calls that models read differently, so they inform without moving the number.
The paper does not provide any persistent identifier string for its own dataset; the model is only mentioned as available in SBML format in Dataset 1 without a DOI or accession.
RDA-F1-01D — FAIR Data Maturity Model: 'Data is identified by a persistent identifier' (priorit · RDA-F1-02D — FAIR Data Maturity Model: 'Data is identified by a globally unique identifier' · FsF-F1-02D — F-UJI/FAIRsFAIR: 'Data is assigned a persistent identifier'
No repository is named as the holder; the data are stated to be in the article and supplementary files, not in a curated repository.
RDA-F4-01M — FAIR Data Maturity Model: metadata is offered so it can be harvested and indexed ( · NIH DMS Policy Element 4 (NOT-OD-21-014) — name the repository where data will be archived · NSTC Desirable Characteristics of Data Repositories (2022) — 'Long-Term Sustainability', 'Reten
The dataset is not listed as a reference entry and no identifier appears in the body text.
FORCE11 Joint Declaration of Data Citation Principles (2014) — data should be cited as a first- · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes · FsF-F3-01M — F-UJI: 'Metadata includes the identifier of the data it describes'
Advisory · not in the published score
“All data generated or analysed during this study are included in this published article and its supplementary information files.”— not found in the paper; verdict downgraded
The statement points to the article and supplementary files (Colavizza category 2) rather than to a repository record. [downgraded to 'no' — no verifiable quote from the paper]
Colavizza, Hrynaszkiewicz, Staden, Whitaker & McGillivray (2020), 'The citation advantage of li · Springer Nature research data policy — Data Availability Statements: standard statement templat · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes
“the model contains 863 metabolic genes, 1379 metabolites (including 1159 unique metabolites), and 1545 reactions including transport and exchange reactions.”
The content of the dataset is described in running prose but not in an itemised inventory section, table, or enumerated list.
RDA-F2-01M — 'Rich metadata is provided to allow discovery' (priority Essential) · FsF-F2-01M — F-UJI: 'Metadata includes descriptive core elements to support data findability' · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data'
“All data generated or analysed during this study are included in this published article and its supplementary information files.”— not found in the paper; verdict downgraded
The data are stated to be included in the published article and supplementary files, which are publicly accessible without any precondition. [downgraded to 'partial' — no verifiable quote from the paper]
RDA-A1.1-01D — 'Data is accessible through a free access protocol' · FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · NSTC Desirable Characteristics of Data Repositories (2022) — 'Free and Easy Access'
Advisory · not in the published score
“All data generated or analysed during this study are included in this published article and its supplementary information files.”— not found in the paper; verdict downgraded
The paper states the data are included in the article and supplementary files, which implies open access but does not label it with an explicit access-level term. [downgraded to 'no' — no verifiable quote from the paper]
FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · RDA-A1-01M — metadata contains information to enable the user to get access to the data · COAR Controlled Vocabularies — Access Rights v1.0 (open / embargoed / restricted / metadata-onl
The data are not sensitive or human-subject related, so no gatekeeper is named or required.
NIH Genomic Data Sharing Policy (NOT-OD-14-124) — controlled-access via a Data Access Committee · RDA-A1.2-01D — 'Data is accessible through an access protocol that supports authentication and · NIH DMS Policy Element 5 (NOT-OD-21-014) — Access, Distribution, or Reuse Considerations (conse
The paper does not mention any retention period, archival commitment, or timing beyond the immediate availability of the article and supplementary files.
NIH DMS Plan Element 4 (NOT-OD-21-014) — Data Preservation, Access, and Associated Timelines · NSTC Desirable Characteristics (2022), Organizational Infrastructure: 'Retention Policy' · RDA-A2-01M — 'Metadata is guaranteed to remain available after data is no longer available'
“The model is available in systems-biology markup language format (SBML level 3 version 1 with fbc version 2) in Dataset 1.”
SBML is an open, community-standard format for systems biology models.
FsF-R1.3-02D — F-UJI: 'Data is available in a file format recommended by the target research co · RDA-R1.3-02D — data is expressed in a machine-understandable community standard · RDA-I1-01D — data uses a knowledge representation expressed in a standardised format
Advisory · not in the published score
“The model is available in systems-biology markup language format (SBML level 3 version 1 with fbc version 2) in Dataset 1.”
SBML is a community-standard data format for systems biology models, so a data/metadata standard is named and applied to the data. [majority verdict 'yes' (4/5 passes agreed)]
RDA-R1.3-01M — 'Metadata complies with a community standard' (priority Essential) · RDA-R1.3-01D — 'Data complies with a community standard' · RDA-I2-01M — '(Meta)data use vocabularies that follow FAIR principles'
“Strain USA300 FPR3757 is one of the common MRSA strains with available genome annotation (GenBank accession number NC_007793.1)”
The paper provides a GenBank accession for the genome used as a reference resource, which is an identifier for a resource other than the study's own dataset.
RDA-I3-01M — '(meta)data include references to other (meta)data' · RDA-I3-03M — 'metadata includes qualified references to other metadata' · FsF-I3-01M — F-UJI: 'Metadata includes links between the data and its related entities'
No licence is named for the data itself; the article's CC-BY licence applies to the article text, not to the data as a separate object. [majority verdict 'no' (4/5 passes agreed)]
RDA-R1.1-01M — 'Metadata includes information about the licence under which the data can be reu · RDA-R1.1-02M — 'Metadata refers to a standard reuse licence' · RDA-R1.1-03M — 'Metadata refers to a machine-understandable reuse licence'
The model is named iSA863 but no version token or date is given to pin a specific snapshot of the data. [majority verdict 'no' (3/5 passes agreed)]
DataCite Metadata Schema 4.6 — the 'Version' property · RDA-R1.2-01M — provenance information (which version was used is provenance) · NSTC Desirable Characteristics of Data Repositories (2022) — 'Provenance', 'Retention Policy'
“All computer codes used to analyze data during this study are available at a public github repository at https://doi.org/10.5281/zenodo.3518501 under GNU General Public License v3.0.”
The code is given a DOIRESOLVABLE locator (Zenodo DOI) with a versioned archive.
NIH DMS Policy Element 2 (NOT-OD-21-014) — 'Related Tools, Software and/or Code' · FAIR4RS Principles v1.0 (Chue Hong et al., 2022; RDA/FORCE11/ReSA) — FAIR Principles for Resear · FORCE11 Software Citation Principles (Smith, Katz & Niemeyer, 2016, PeerJ CS 2:e86)
“This work was supported by the Nebraska Systems Science Initiative Seed Grant [WBS# 21-3209-0013] to R.S., V.C.T., K.W.B. and P.D.F.; NIH/NIAID P01AI083211 to K.W.B., V.C.T. and P.D.F.; NIH/NIAID R01AI125588 to V.C.T.”
The paper provides specific grant numbers attached to named funders.
DataCite Metadata Schema 4.6 — 'FundingReference' property (funderName, funderIdentifier, award · Crossref Funder Registry — canonical funder identifiers for funding metadata · RDA-F2-01M — rich metadata provided to allow discovery (funding is part of the descriptive reco
Advisory · not in the published score
“Briefly, the analysis was performed isocratically at 0.5 mL/min and 65 °C using a Biorad Aminex HPX-87H cation exchange column with 0.13 N H2SO4 as the mobile phase.”— not found in the paper; verdict downgraded
The paper names a specific instrument (Biorad Aminex HPX-87H column) and other equipment used to produce the experimental data. [downgraded to 'partial' — no verifiable quote from the paper] [majority verdict 'partial' (3/5 passes agreed)]
RDA-R1.2-01M — 'Metadata includes provenance information according to community- specific standa · FsF-R1.2-01M — F-UJI: 'Metadata includes provenance information about data creation or generati · W3C PROV-O (W3C Recommendation, 2013) — the entity/activity/agent model of provenance
“The model is available in systems-biology markup language format (SBML level 3 version 1 with fbc version 2) in Dataset 1.”
The documentation (variable definitions, etc.) is provided inside the article and its supplementary files, not as a separate object shipped with the data. [majority verdict 'partial' (4/5 passes agreed)]
RDA-R1-01M — '(Meta)data are richly described with a plurality of accurate and relevant attribu · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data' · NIH DMS Policy Element 3 (NOT-OD-21-014) — Standards (documentation and metadata to accompany t
Calibrated FAIR score — a parallel quality metric, independent of the DataRank citation score. See the full evaluation →
Base Score Contribution
0.489
From this paper's citation signal
Citation Network Contribution
0.288
From 11 citing papers with measurable signal
Ranked by each citer's contribution to N(p) — log1p(Cq) divided by its reference count — out of 17 citers.
NIAID NIH HHS
Grant: R01 AI125588
NIAID NIH HHS
Grant: P01 AI083211
National Institutes of Health
Grant: 5R01AI125588-04
The role of arginine catabolic pathways in modulating staphylococcal fitness
National Institutes of Health
Grant: 2P01AI083211-06
Innate Immune Response to S. aureus biofilm
FWCI
1.27
Citation Percentile
0.8%
Citation Trend
Fields of Study
MeSH Terms
Keywords
Sustainable Development Goals