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Systems biology analysis of the Clostridioides difficile core-genome contextualizes microenvironmental evolutionary pressures leading to genotypic and phenotypic divergence

npj Systems Biology and Applications(2020)10.1038/s41540-020-00151-9Source: DataRank Database

Systems biology analysis of the Clostridioides difficile core-genome contextualizes microenvironmental evolutionary pressures leading to genotypic and phenotypic divergence is a research paper published in npj Systems Biology and Applications (2020). On theSindex it has a DataRank of 0. It has been cited 30 times.

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Open Access30 citations

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›Methodology & internals

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Pipeline:MetadataData-paper checkEnrichmentCitation networkScoring

Enrichment:Funding (14 grants)Impact (FWCI 0.39)OA: goldTopics (57)IDs (PubMed, PMC, OpenAlex)Annotations (2)SDGs (3)

FAIR Checklist

Context only (not used in score)

Findable (1/2)

Has DOI

Accessible (1/2)

Open Access

Interoperable (0/2)

Reusable (0/3)

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Authors (10)

Heather A. Danhof ORCID,Colleen K. Brand,Numan Oezguen ORCID,Firas S. Midani ORCID,Bernhard Ø. Palsson ORCID

Live enrichment

PubMed:33082337 PMC:PMC7576604 OpenAlex:https://openalex.org/W3094560666

Division of Intramural Research, National Institute of Allergy and Infectious Diseases

Grant: U01-AI124316

Division of Intramural Research, National Institute of Allergy and Infectious Diseases

Grant: U01-AI124290

Division of Intramural Research, National Institute of Allergy and Infectious Diseases

Grant: R01AI123278

Division of Intramural Research, National Institute of Allergy and Infectious Diseases

Grant: P30-DK56338

NIAID NIH HHS

Grant: F32 AI136404

NIAID NIH HHS

Grant: U01 AI124290

NIDDK NIH HHS

Grant: P30 DK056338

NIAID NIH HHS

Grant: U01 AI124316

NIDDK NIH HHS

Grant: T32 DK007664

National Institutes of Health

Grant: 5P30DK056338-18

Texas Medical Center Digestive Diseases Center

National Institutes of Health

Grant: 5R01AI123278-04

Diet driven evolution of epidemic ribotypes of Clostridium difficile

National Institutes of Health

Grant: 5F32AI136404-03

Metabolic adaptation drives pathogenicity of C. difficile epidemic strain RT078

National Institutes of Health

Grant: 5U01AI124290-04

Decoding Antibiotic-induced Susceptibility to Clostridium difficile Infection

National Institutes of Health

Grant: 1U01AI124316-01

Systems Biology Approach to Redefine Susceptibility Testing and Treatment of MDR Pathogens in the Context of Host Immunity

FWCI

0.39

Citation Percentile

0.8%

Citation Trend

2020

2021

2022

2023

2024

2025

2026

goldLicense: cc-by

journalhttps://www.nature.com/articles/s41540-020-00151-9.pdf

publisherhttps://www.nature.com/articles/s41540-020-00151-9.pdf

publisherhttps://www.nature.com/articles/s41540-020-00151-9

journalhttps://doi.org/10.1038/s41540-020-00151-9

repositoryhttps://pubmed.ncbi.nlm.nih.gov/33082337

Fields of Study

Clostridium difficile and Clostridium perfringens researchGut microbiota and healthPharmacological Effects of Natural Compounds0301 basic medicine03 medical and health sciences0303 health sciencesClostridioides difficileEnvironmentEvolution, MolecularGenome, BacterialGenomicsGenotypePhenotypePhylogenySystems Biology

MeSH Terms

EnvironmentGenotypePhenotypePhylogenyClostridioides difficileGenome, BacterialEvolution, MolecularGenomicsSystems Biology

Keywords

BiologyGeneticsGenomeComparative genomicsGenome evolutionPhenotypeGeneComputational biologyGenomics570GenotypeEvolutionEnvironmentArticleVaccine RelatedEvolution, MolecularBiodefense6162.2 Factors relating to the physical environmentAetiologyPhylogenyClostridioides difficilePreventionSystems BiologyHuman GenomeBacterialMolecularInfectious DiseasesEmerging Infectious DiseasesDigestive DiseasesInfectionGenome, BacterialBiotechnology

Sustainable Development Goals

SDG 3: 3. Good healthSDG 4: 4. EducationSDG 0: Life in Land