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A eukaryotic-like ubiquitination system in bacterial antiviral defence

Nature(2024)10.1038/s41586-024-07730-4Source: DataRank Database

A eukaryotic-like ubiquitination system in bacterial antiviral defence is a research paper published in Nature (2024). On theSindex it has a DataRank of 0.735. It has been cited 26 times, with 20 citing works in its 1-hop citation network.

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0.735DataRank · unranked

Scored on demand from live citation data

Deposits data Open Access26 citations · 20 citing works in its network

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Linked data & code

pdb doi

Data availability

Repositories this paper deposited data in (declared in PubMed).

PDB8TYX, 8TYY, 8TZ0, 8TYZ

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›Methodology & internals

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Pipeline:MetadataData-paper checkEnrichmentCitation networkScoring

Enrichment:Funding (16 grants)OA: greenTopics (66)IDs (PubMed, PMC)Annotations (2)

FAIR Checklist

Context only (not used in score)

Findable (1/2)

Has DOI

Accessible (1/2)

Open Access

Interoperable (0/2)

Reusable (0/3)

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DataRank Breakdown

Base Score 67%Citation Network 33%

Base Score Contribution

0.494

From this paper's citation signal

Citation Network Contribution

0.240

From 13 citing papers with measurable signal

Learn more about DataRank methodology →

Top 5 citers driving the network score

Ranked by each citer's contribution to N(p) — log1p(C_q) divided by its reference count — out of 20 citers.

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Nature202442 citations66 referencesContributes 0.057
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ACS Nano20253 citations51 referencesContributes 0.027
A ubiquitin-like protein controls assembly of a bacterial type VIIb secretion system
Science Advances20252 citations41 referencesContributes 0.027
Multi-conflict islands are a widespread trend within Serratia spp.
Cell Reports20248 citations96 referencesContributes 0.023

Authors (9)

Qiaozhen Ye ORCID,Jiaxi Cai ORCID,Minheng Gong ORCID,Hannah E. Ledvina ORCID,Huilin Zhou ORCID

Live enrichment

PubMed:39020180 PMC:PMC11476048

NIH HHS

Grant: S10 OD023498

NIGMS NIH HHS

Grant: P30 GM124165

NIGMS NIH HHS

Grant: R01 GM116897

NIH HHS

Grant: S10 OD021527

NIGMS NIH HHS

Grant: T32 GM139795

NIGMS NIH HHS

Grant: R01 GM151191

NIGMS NIH HHS

Grant: R35 GM144121

NCCIH NIH HHS

Grant: DP2 AT012346

National Institutes of Health

Grant: 1S10OD023498-01

Orbitrap Fusion Mass Spectrometer

National Institutes of Health

Grant: 1S10OD021527-01

Pixel Array Detector for Macromolecular Crystallography

National Institutes of Health

Grant: 5T32GM139795-03

Molecular Biophysics Training Grant at UC San Diego

National Institutes of Health

Grant: 5R01GM116897-09

Suppression of duplication-mediated genome rearrangements by protein sumoylation

National Institutes of Health

Grant: 1R01GM151191-01

Kinetochore Assembly and Regulation

National Institutes of Health

Grant: 5R35GM144121-03

Molecular mechanisms of nucleic acid recognition and maintenance in meiosis and innate immunity

National Institutes of Health

Grant: 3P30GM124165-03S1

NE-CAT: A Resource for Advanced Macromolecular Crystallography

National Institutes of Health

Grant: 1DP2AT012346-01

Deciphering the crosstalk between bacteria and their mammalian hosts

greenLicense: Springer Nature TDM

repositoryhttps://escholarship.org/content/qt3x69z048/qt3x69z048.pdf

publisherhttps://www.nature.com/articles/s41586-024-07730-4.pdf

publisherhttps://www.nature.com/articles/s41586-024-07730-4

repositoryhttps://pmc.ncbi.nlm.nih.gov/articles/PMC11476048/pdf/nihms-2026663.pdf

https://doi.org/10.1038/s41586-024-07730-4

Fields of Study

0301 basic medicine03 medical and health sciences

MeSH Terms

EscherichiaBacteriophagesCysteineUbiquitin-Activating EnzymesUbiquitin-Conjugating EnzymesLysineBacterial ProteinsUbiquitinsCrystallography, X-RayEvolution, MolecularCatalytic DomainOperonModels, MolecularUbiquitinationEukaryotaProtein DomainsDeubiquitinating Enzymes

Keywords

EscherichiaModels, Molecular570Bacterial Proteins (mesh)General Science & TechnologyCysteine (mesh)Evolution1.1 Normal biological development and functioningOperon (mesh)General Science & Technology (science-metrix)Bacteriophages (mesh)Deubiquitinating Enzymes (mesh)Ubiquitin-Activating EnzymesCatalytic Domain (mesh)Crystallography, X-RayEukaryota (mesh)Evolution, MolecularBacterial ProteinsProtein DomainsModelsProtein Domains (mesh)Catalytic DomainEscherichia (mesh)OperonBacteriophagesX-Ray (mesh)CysteineUbiquitinsLysine (mesh)1.1 Normal biological development and functioning (hrcs-rac)Ubiquitination (mesh)31 Biological Sciences (for-2020)CrystallographyDeubiquitinating EnzymesLysineUbiquitinationMolecularEukaryotaBiological SciencesUbiquitin-Conjugating Enzymes (mesh)3101 Biochemistry and Cell Biology (for-2020)Ubiquitins (mesh)Molecular (mesh)Ubiquitin-Conjugating EnzymesX-RayUbiquitin-Activating Enzymes (mesh)Biochemistry and Cell Biology

Related Papers (2)

An E1–E2 fusion protein primes antiviral immune signalling in bacteria

Nature(2023)

co-citedsame journal

10.1038/s41586-022-05647-4

Ubiquitin‐targeted bacterial effectors: rule breakers of the ubiquitin system

The EMBO Journal(2023)

co-cited

10.15252/embj.2023114318

A eukaryotic-like ubiquitination system in bacterial antiviral defence

FAIR Checklist

DataRank Breakdown

Top 5 citers driving the network score

Authors (9)

Funding (16 grants)

Open Access

Topics

Annotations (Europe PMC)

Related Papers (2)